Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 MFSD11-216ENST00000590393 1141 ntBASIC19.49■□□□□ 0.71
BRF2Q9HAW0 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 AC087633.2-202ENST00000565166 1439 ntBASIC19.49■□□□□ 0.71
BRF2Q9HAW0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRF2Q9HAW0 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 AC006015.1-201ENST00000429970 570 ntBASIC19.48■□□□□ 0.71
BRF2Q9HAW0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRF2Q9HAW0 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRF2Q9HAW0 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 MIR5787-201ENST00000611784 55 ntBASIC19.46■□□□□ 0.71
BRF2Q9HAW0 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 AC099778.1-201ENST00000568593 1911 ntBASIC19.46■□□□□ 0.71
BRF2Q9HAW0 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BRF2Q9HAW0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 DUX4L16-201ENST00000555130 1264 ntBASIC19.45■□□□□ 0.7
BRF2Q9HAW0 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 AL356652.1-201ENST00000615962 565 ntBASIC19.45■□□□□ 0.7
BRF2Q9HAW0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 CYP21A1P-202ENST00000354927 1481 ntBASIC19.45■□□□□ 0.7
BRF2Q9HAW0 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
BRF2Q9HAW0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms