Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 NIFKP9-201ENST00000419265 221 ntBASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 AL355385.1-201ENST00000606123 409 ntBASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.94■□□□□ 0.94
COL25A1Q9BXS0 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL25A1Q9BXS0 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 AC004951.3-201ENST00000418645 1148 ntBASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL25A1Q9BXS0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 AL136038.3-201ENST00000561909 1096 ntBASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
COL25A1Q9BXS0 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 AC092119.3-201ENST00000612618 583 ntBASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 AL031008.1-201ENST00000619963 541 ntBASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL25A1Q9BXS0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL25A1Q9BXS0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 MIR1233-2-201ENST00000408138 82 ntBASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 MIR1233-1-201ENST00000408722 82 ntBASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 AC079776.4-201ENST00000511039 504 ntBASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 AC104692.2-201ENST00000603054 253 ntBASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.89■□□□□ 0.93
COL25A1Q9BXS0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 NPAP1P7-201ENST00000613027 823 ntBASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 FSCN1P1-201ENST00000568912 1481 ntBASIC20.88■□□□□ 0.93
COL25A1Q9BXS0 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms