Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CDX2Q99626 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDX2Q99626 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDX2Q99626 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.57■■□□□ 1.04
CDX2Q99626 TSPY14P-201ENST00000303979 915 ntBASIC21.57■■□□□ 1.04
CDX2Q99626 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDX2Q99626 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.57■■□□□ 1.04
CDX2Q99626 RNF152P1-201ENST00000397754 604 ntBASIC21.57■■□□□ 1.04
CDX2Q99626 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDX2Q99626 KSR1P1-201ENST00000446298 240 ntBASIC21.57■■□□□ 1.04
CDX2Q99626 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.57■■□□□ 1.04
CDX2Q99626 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
CDX2Q99626 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.57■■□□□ 1.04
CDX2Q99626 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.57■■□□□ 1.04
CDX2Q99626 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDX2Q99626 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.57■■□□□ 1.04
CDX2Q99626 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CDX2Q99626 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDX2Q99626 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.57■■□□□ 1.04
CDX2Q99626 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDX2Q99626 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.57■■□□□ 1.04
CDX2Q99626 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.57■■□□□ 1.04
CDX2Q99626 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDX2Q99626 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.56■■□□□ 1.04
CDX2Q99626 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDX2Q99626 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.56■■□□□ 1.04
CDX2Q99626 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.56■■□□□ 1.04
CDX2Q99626 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDX2Q99626 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDX2Q99626 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CDX2Q99626 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.56■■□□□ 1.04
CDX2Q99626 FAM86EP-206ENST00000510506 987 ntBASIC21.56■■□□□ 1.04
CDX2Q99626 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.56■■□□□ 1.04
CDX2Q99626 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.56■■□□□ 1.04
CDX2Q99626 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.56■■□□□ 1.04
CDX2Q99626 AC139887.4-201ENST00000607877 719 ntBASIC21.56■■□□□ 1.04
CDX2Q99626 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CDX2Q99626 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CDX2Q99626 IER3-202ENST00000376377 1350 ntBASIC21.56■■□□□ 1.04
CDX2Q99626 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDX2Q99626 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.56■■□□□ 1.04
CDX2Q99626 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDX2Q99626 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.56■■□□□ 1.04
CDX2Q99626 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDX2Q99626 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
CDX2Q99626 AC092068.2-201ENST00000590491 1708 ntBASIC21.55■■□□□ 1.04
CDX2Q99626 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDX2Q99626 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.55■■□□□ 1.04
CDX2Q99626 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CDX2Q99626 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDX2Q99626 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDX2Q99626 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CDX2Q99626 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.55■■□□□ 1.04
CDX2Q99626 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.55■■□□□ 1.04
CDX2Q99626 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.55■■□□□ 1.04
CDX2Q99626 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.55■■□□□ 1.04
CDX2Q99626 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.55■■□□□ 1.04
CDX2Q99626 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDX2Q99626 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CDX2Q99626 KRT16P1-201ENST00000399124 1418 ntBASIC21.55■■□□□ 1.04
CDX2Q99626 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CDX2Q99626 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDX2Q99626 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDX2Q99626 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDX2Q99626 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.54■■□□□ 1.04
CDX2Q99626 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.54■■□□□ 1.04
CDX2Q99626 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.54■■□□□ 1.04
CDX2Q99626 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDX2Q99626 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDX2Q99626 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.54■■□□□ 1.04
CDX2Q99626 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDX2Q99626 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDX2Q99626 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDX2Q99626 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.53■■□□□ 1.04
CDX2Q99626 AC124283.5-201ENST00000624661 1809 ntBASIC21.53■■□□□ 1.04
CDX2Q99626 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDX2Q99626 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDX2Q99626 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.53■■□□□ 1.04
CDX2Q99626 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CDX2Q99626 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDX2Q99626 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDX2Q99626 PGM5P4-201ENST00000421970 445 ntBASIC21.53■■□□□ 1.04
CDX2Q99626 FAM207BP-201ENST00000447172 505 ntBASIC21.53■■□□□ 1.04
CDX2Q99626 AC128688.1-201ENST00000487626 519 ntBASIC21.53■■□□□ 1.04
CDX2Q99626 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDX2Q99626 AC006538.3-201ENST00000612495 578 ntBASIC21.53■■□□□ 1.04
CDX2Q99626 FAM87A-204ENST00000613235 858 ntBASIC21.53■■□□□ 1.04
CDX2Q99626 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.53■■□□□ 1.04
CDX2Q99626 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.53■■□□□ 1.04
CDX2Q99626 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDX2Q99626 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.53■■□□□ 1.04
CDX2Q99626 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDX2Q99626 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDX2Q99626 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.52■■□□□ 1.04
CDX2Q99626 NIFKP9-201ENST00000419265 221 ntBASIC21.52■■□□□ 1.04
CDX2Q99626 AP000347.1-202ENST00000435868 847 ntBASIC21.52■■□□□ 1.04
CDX2Q99626 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDX2Q99626 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.52■■□□□ 1.04
CDX2Q99626 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.52■■□□□ 1.04
CDX2Q99626 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms