Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CSMD1Q96PZ7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.46■□□□□ 0.39
CSMD1Q96PZ7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CSMD1Q96PZ7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CSMD1Q96PZ7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
CSMD1Q96PZ7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 AL355355.2-201ENST00000442321 338 ntBASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 AL034346.1-201ENST00000568244 1277 ntBASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 FAM197Y1-201ENST00000421178 764 ntBASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 C11orf96-202ENST00000528572 1834 ntBASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.45■□□□□ 0.38
CSMD1Q96PZ7 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 AL031133.1-201ENST00000406807 723 ntBASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.44■□□□□ 0.38
CSMD1Q96PZ7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 AC026471.6-201ENST00000622954 1905 ntBASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
CSMD1Q96PZ7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 KRT18P68-201ENST00000392293 1000 ntBASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD1Q96PZ7 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSMD1Q96PZ7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CSMD1Q96PZ7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CSMD1Q96PZ7 AC091799.1-201ENST00000422823 811 ntBASIC17.41■□□□□ 0.38
CSMD1Q96PZ7 AP000347.1-202ENST00000435868 847 ntBASIC17.41■□□□□ 0.38
CSMD1Q96PZ7 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CSMD1Q96PZ7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CSMD1Q96PZ7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CSMD1Q96PZ7 PVRIG2P-201ENST00000435460 978 ntBASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms