Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AP006587.3-201ENST00000525742 1516 ntBASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.79■□□□□ 0.6
ZNF540Q8NDQ6 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 OR2I1P-207ENST00000453522 948 ntBASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF540Q8NDQ6 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.77■□□□□ 0.6
ZNF540Q8NDQ6 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
ZNF540Q8NDQ6 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
ZNF540Q8NDQ6 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF540Q8NDQ6 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ZNF540Q8NDQ6 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 TCF3P1-201ENST00000423021 1937 ntBASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms