Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CCDC89Q8N998 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC89Q8N998 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC89Q8N998 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
CCDC89Q8N998 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC89Q8N998 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC89Q8N998 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
CCDC89Q8N998 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC89Q8N998 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC89Q8N998 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CCDC89Q8N998 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC89Q8N998 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC89Q8N998 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC89Q8N998 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC89Q8N998 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC89Q8N998 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC89Q8N998 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC89Q8N998 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC89Q8N998 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC89Q8N998 AP001160.3-201ENST00000601484 763 ntBASIC21.08■□□□□ 0.97
CCDC89Q8N998 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC89Q8N998 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC89Q8N998 AC007952.6-201ENST00000573168 2673 ntBASIC21.08■□□□□ 0.96
CCDC89Q8N998 AC003957.1-201ENST00000625108 2673 ntBASIC21.08■□□□□ 0.96
CCDC89Q8N998 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC89Q8N998 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.08■□□□□ 0.96
CCDC89Q8N998 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC89Q8N998 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC89Q8N998 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC89Q8N998 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CCDC89Q8N998 MIR638-201ENST00000385237 100 ntBASIC21.07■□□□□ 0.96
CCDC89Q8N998 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CCDC89Q8N998 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC89Q8N998 AC123595.1-201ENST00000440769 1046 ntBASIC21.07■□□□□ 0.96
CCDC89Q8N998 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.07■□□□□ 0.96
CCDC89Q8N998 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.07■□□□□ 0.96
CCDC89Q8N998 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CCDC89Q8N998 AC116050.2-201ENST00000612102 1779 ntBASIC21.07■□□□□ 0.96
CCDC89Q8N998 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC89Q8N998 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC89Q8N998 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC89Q8N998 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC89Q8N998 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC89Q8N998 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC89Q8N998 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC89Q8N998 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC89Q8N998 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC89Q8N998 SLC7A5P2-201ENST00000553010 536 ntBASIC21.06■□□□□ 0.96
CCDC89Q8N998 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.06■□□□□ 0.96
CCDC89Q8N998 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CCDC89Q8N998 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC89Q8N998 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC89Q8N998 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC89Q8N998 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
CCDC89Q8N998 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC89Q8N998 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC89Q8N998 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC89Q8N998 AIRN-201ENST00000601203 4374 ntBASIC21.05■□□□□ 0.96
CCDC89Q8N998 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC89Q8N998 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC89Q8N998 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CCDC89Q8N998 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC89Q8N998 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC89Q8N998 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC89Q8N998 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC89Q8N998 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.05■□□□□ 0.96
CCDC89Q8N998 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC89Q8N998 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC89Q8N998 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC89Q8N998 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC89Q8N998 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC89Q8N998 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC89Q8N998 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC89Q8N998 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC89Q8N998 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC89Q8N998 YBX1P1-201ENST00000445822 960 ntBASIC21.04■□□□□ 0.96
CCDC89Q8N998 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC89Q8N998 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC89Q8N998 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCDC89Q8N998 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms