Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 AC008403.3-201ENST00000598924 454 ntBASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
SH3RF1Q7Z6J0 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 AC061975.6-201ENST00000579045 1553 ntBASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 RBM17P2-201ENST00000616397 1405 ntBASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 MIR1224-201ENST00000408193 85 ntBASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.37■■□□□ 1.33
SH3RF1Q7Z6J0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 LINC01521-201ENST00000504184 1943 ntBASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 AL162412.1-201ENST00000567129 965 ntBASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 AC120498.10-201ENST00000621827 505 ntBASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
SH3RF1Q7Z6J0 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 AC073130.3-201ENST00000624389 2278 ntBASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 AC008175.2-201ENST00000612840 297 ntBASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 AC121338.2-201ENST00000622535 1744 ntBASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
SH3RF1Q7Z6J0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 MIR4497-201ENST00000583208 89 ntBASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SH3RF1Q7Z6J0 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 ME2-216ENST00000639850 2331 ntTSL 5 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 AC073912.3-201ENST00000624414 853 ntBASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms