Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.36■□□□□ 0.53
SHFQ7M4L6 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.36■□□□□ 0.53
SHFQ7M4L6 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SHFQ7M4L6 AC092720.2-201ENST00000602388 1665 ntBASIC18.36■□□□□ 0.53
SHFQ7M4L6 AL031432.3-201ENST00000607698 485 ntBASIC18.36■□□□□ 0.53
SHFQ7M4L6 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SHFQ7M4L6 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SHFQ7M4L6 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHFQ7M4L6 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHFQ7M4L6 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.35■□□□□ 0.53
SHFQ7M4L6 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SHFQ7M4L6 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHFQ7M4L6 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHFQ7M4L6 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHFQ7M4L6 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SHFQ7M4L6 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHFQ7M4L6 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SHFQ7M4L6 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHFQ7M4L6 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHFQ7M4L6 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.35■□□□□ 0.53
SHFQ7M4L6 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.35■□□□□ 0.53
SHFQ7M4L6 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.35■□□□□ 0.53
SHFQ7M4L6 AL358852.1-201ENST00000623174 1268 ntBASIC18.35■□□□□ 0.53
SHFQ7M4L6 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.35■□□□□ 0.53
SHFQ7M4L6 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHFQ7M4L6 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHFQ7M4L6 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.34■□□□□ 0.53
SHFQ7M4L6 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.34■□□□□ 0.53
SHFQ7M4L6 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.34■□□□□ 0.53
SHFQ7M4L6 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.34■□□□□ 0.53
SHFQ7M4L6 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 TPRG1LP1-201ENST00000598702 760 ntBASIC18.34■□□□□ 0.53
SHFQ7M4L6 AC008175.2-201ENST00000612840 297 ntBASIC18.34■□□□□ 0.53
SHFQ7M4L6 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.34■□□□□ 0.53
SHFQ7M4L6 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.34■□□□□ 0.53
SHFQ7M4L6 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHFQ7M4L6 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHFQ7M4L6 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHFQ7M4L6 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHFQ7M4L6 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHFQ7M4L6 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
SHFQ7M4L6 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHFQ7M4L6 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHFQ7M4L6 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
SHFQ7M4L6 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHFQ7M4L6 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHFQ7M4L6 AC116562.4-201ENST00000641316 2276 ntBASIC18.33■□□□□ 0.53
SHFQ7M4L6 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHFQ7M4L6 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
SHFQ7M4L6 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.33■□□□□ 0.52
SHFQ7M4L6 POU5F1P4-201ENST00000413175 1085 ntBASIC18.33■□□□□ 0.52
SHFQ7M4L6 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.33■□□□□ 0.52
SHFQ7M4L6 SUDS3P1-201ENST00000505831 966 ntBASIC18.33■□□□□ 0.52
SHFQ7M4L6 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.33■□□□□ 0.52
SHFQ7M4L6 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SHFQ7M4L6 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHFQ7M4L6 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.32■□□□□ 0.52
SHFQ7M4L6 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHFQ7M4L6 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SHFQ7M4L6 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHFQ7M4L6 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.32■□□□□ 0.52
SHFQ7M4L6 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHFQ7M4L6 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SHFQ7M4L6 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.32■□□□□ 0.52
SHFQ7M4L6 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHFQ7M4L6 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.32■□□□□ 0.52
SHFQ7M4L6 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.32■□□□□ 0.52
SHFQ7M4L6 AL139246.5-201ENST00000606645 996 ntBASIC18.32■□□□□ 0.52
SHFQ7M4L6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.32■□□□□ 0.52
SHFQ7M4L6 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.32■□□□□ 0.52
SHFQ7M4L6 SMG8-203ENST00000578922 2178 ntBASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms