Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.85■□□□□ 0.29
CSPG4Q6UVK1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 AC026471.5-201ENST00000615068 467 ntBASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 Six3os1_6.1-201ENST00000620790 196 ntBASIC16.84■□□□□ 0.29
CSPG4Q6UVK1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.29
CSPG4Q6UVK1 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.83■□□□□ 0.29
CSPG4Q6UVK1 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
CSPG4Q6UVK1 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CSPG4Q6UVK1 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 MOK-233ENST00000524214 1539 ntTSL 2 BASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 NUDT16P1-203ENST00000513809 620 ntBASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 KRT18P22-201ENST00000402024 1347 ntBASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CSPG4Q6UVK1 AC087633.2-202ENST00000565166 1439 ntBASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 AC005521.1-201ENST00000393351 872 ntBASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 AC073195.1-201ENST00000607241 877 ntBASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CSPG4Q6UVK1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 KRT126P-201ENST00000549467 1181 ntBASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 AF186192.3-201ENST00000583427 947 ntBASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 AL121894.2-201ENST00000602977 491 ntBASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms