Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC007322.4-201ENST00000509611 723 ntBASIC21.18■□□□□ 0.98
CDH6P55285 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.18■□□□□ 0.98
CDH6P55285 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDH6P55285 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.18■□□□□ 0.98
CDH6P55285 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDH6P55285 FAM21FP-204ENST00000608637 956 ntBASIC21.18■□□□□ 0.98
CDH6P55285 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH6P55285 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.18■□□□□ 0.98
CDH6P55285 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDH6P55285 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.18■□□□□ 0.98
CDH6P55285 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDH6P55285 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH6P55285 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDH6P55285 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CDH6P55285 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
CDH6P55285 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
CDH6P55285 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.17■□□□□ 0.98
CDH6P55285 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.17■□□□□ 0.98
CDH6P55285 DUX4L16-201ENST00000555130 1264 ntBASIC21.17■□□□□ 0.98
CDH6P55285 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.17■□□□□ 0.98
CDH6P55285 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.17■□□□□ 0.98
CDH6P55285 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.17■□□□□ 0.98
CDH6P55285 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.17■□□□□ 0.98
CDH6P55285 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.17■□□□□ 0.98
CDH6P55285 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.17■□□□□ 0.98
CDH6P55285 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.17■□□□□ 0.98
CDH6P55285 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CDH6P55285 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDH6P55285 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.16■□□□□ 0.98
CDH6P55285 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CDH6P55285 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.16■□□□□ 0.98
CDH6P55285 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.16■□□□□ 0.98
CDH6P55285 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.16■□□□□ 0.98
CDH6P55285 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.16■□□□□ 0.98
CDH6P55285 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CDH6P55285 AC016405.3-201ENST00000607710 860 ntBASIC21.16■□□□□ 0.98
CDH6P55285 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.16■□□□□ 0.98
CDH6P55285 BID-214ENST00000617586 542 ntTSL 5 BASIC21.16■□□□□ 0.98
CDH6P55285 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
CDH6P55285 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.16■□□□□ 0.98
CDH6P55285 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.16■□□□□ 0.98
CDH6P55285 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH6P55285 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH6P55285 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.15■□□□□ 0.98
CDH6P55285 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH6P55285 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CDH6P55285 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDH6P55285 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.15■□□□□ 0.98
CDH6P55285 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.15■□□□□ 0.98
CDH6P55285 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.15■□□□□ 0.98
CDH6P55285 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH6P55285 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.15■□□□□ 0.98
CDH6P55285 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH6P55285 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH6P55285 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH6P55285 CNN2P6-201ENST00000439038 900 ntBASIC21.15■□□□□ 0.98
CDH6P55285 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.15■□□□□ 0.98
CDH6P55285 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.15■□□□□ 0.98
CDH6P55285 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.15■□□□□ 0.98
CDH6P55285 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CDH6P55285 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH6P55285 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
CDH6P55285 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH6P55285 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CDH6P55285 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH6P55285 KRT8P36-201ENST00000489121 1440 ntBASIC21.14■□□□□ 0.98
CDH6P55285 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.14■□□□□ 0.98
CDH6P55285 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.14■□□□□ 0.98
CDH6P55285 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CDH6P55285 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CDH6P55285 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH6P55285 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CDH6P55285 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH6P55285 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH6P55285 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH6P55285 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.14■□□□□ 0.97
CDH6P55285 AL162412.1-201ENST00000567129 965 ntBASIC21.14■□□□□ 0.97
CDH6P55285 AL391422.3-201ENST00000603791 2761 ntBASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms