Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDH4P55283 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.85■□□□□ 0.93
CDH4P55283 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.85■□□□□ 0.93
CDH4P55283 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.85■□□□□ 0.93
CDH4P55283 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CDH4P55283 CD99P1-205ENST00000527459 561 ntBASIC20.85■□□□□ 0.93
CDH4P55283 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.85■□□□□ 0.93
CDH4P55283 AL121603.2-201ENST00000557373 2117 ntBASIC20.85■□□□□ 0.93
CDH4P55283 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CDH4P55283 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.85■□□□□ 0.93
CDH4P55283 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDH4P55283 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH4P55283 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.84■□□□□ 0.93
CDH4P55283 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH4P55283 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.84■□□□□ 0.93
CDH4P55283 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.84■□□□□ 0.93
CDH4P55283 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH4P55283 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.84■□□□□ 0.93
CDH4P55283 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.84■□□□□ 0.93
CDH4P55283 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.84■□□□□ 0.93
CDH4P55283 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CDH4P55283 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH4P55283 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH4P55283 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.84■□□□□ 0.93
CDH4P55283 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH4P55283 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH4P55283 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CDH4P55283 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.83■□□□□ 0.93
CDH4P55283 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH4P55283 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH4P55283 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH4P55283 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.83■□□□□ 0.93
CDH4P55283 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.83■□□□□ 0.93
CDH4P55283 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH4P55283 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.83■□□□□ 0.93
CDH4P55283 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.83■□□□□ 0.93
CDH4P55283 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDH4P55283 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CDH4P55283 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDH4P55283 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.83■□□□□ 0.92
CDH4P55283 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
CDH4P55283 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDH4P55283 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDH4P55283 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDH4P55283 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
CDH4P55283 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.83■□□□□ 0.92
CDH4P55283 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
CDH4P55283 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CDH4P55283 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH4P55283 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.82■□□□□ 0.92
CDH4P55283 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.82■□□□□ 0.92
CDH4P55283 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
CDH4P55283 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CDH4P55283 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH4P55283 RNA5SP413-201ENST00000516373 109 ntBASIC20.82■□□□□ 0.92
CDH4P55283 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.82■□□□□ 0.92
CDH4P55283 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.82■□□□□ 0.92
CDH4P55283 HLA-B-256ENST00000639848 1089 ntBASIC20.82■□□□□ 0.92
CDH4P55283 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.82■□□□□ 0.92
CDH4P55283 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH4P55283 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.82■□□□□ 0.92
CDH4P55283 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH4P55283 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.81■□□□□ 0.92
CDH4P55283 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH4P55283 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CDH4P55283 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.81■□□□□ 0.92
CDH4P55283 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDH4P55283 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH4P55283 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.81■□□□□ 0.92
CDH4P55283 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH4P55283 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.81■□□□□ 0.92
CDH4P55283 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CDH4P55283 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CDH4P55283 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH4P55283 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH4P55283 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.81■□□□□ 0.92
CDH4P55283 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.81■□□□□ 0.92
CDH4P55283 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CDH4P55283 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDH4P55283 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.81■□□□□ 0.92
CDH4P55283 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDH4P55283 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.8■□□□□ 0.92
CDH4P55283 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH4P55283 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDH4P55283 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.8■□□□□ 0.92
CDH4P55283 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.8■□□□□ 0.92
CDH4P55283 AC060766.5-201ENST00000590539 871 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms