Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TNFRSF4P43489 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TNFRSF4P43489 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TNFRSF4P43489 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
TNFRSF4P43489 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.59■□□□□ 0.89
TNFRSF4P43489 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.59■□□□□ 0.89
TNFRSF4P43489 AC073912.3-201ENST00000624414 853 ntBASIC20.59■□□□□ 0.89
TNFRSF4P43489 KRT8P36-201ENST00000489121 1440 ntBASIC20.59■□□□□ 0.89
TNFRSF4P43489 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
TNFRSF4P43489 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TNFRSF4P43489 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.59■□□□□ 0.89
TNFRSF4P43489 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TNFRSF4P43489 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TNFRSF4P43489 KRT17P2-201ENST00000300992 1314 ntBASIC20.58■□□□□ 0.89
TNFRSF4P43489 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TNFRSF4P43489 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TNFRSF4P43489 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TNFRSF4P43489 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TNFRSF4P43489 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 PRKY-204ENST00000533551 1019 ntBASIC20.58■□□□□ 0.89
TNFRSF4P43489 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 MIR2861-201ENST00000636310 90 ntBASIC20.58■□□□□ 0.89
TNFRSF4P43489 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.58■□□□□ 0.89
TNFRSF4P43489 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TNFRSF4P43489 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TNFRSF4P43489 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TNFRSF4P43489 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
TNFRSF4P43489 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
TNFRSF4P43489 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.57■□□□□ 0.88
TNFRSF4P43489 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.57■□□□□ 0.88
TNFRSF4P43489 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.57■□□□□ 0.88
TNFRSF4P43489 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
TNFRSF4P43489 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.57■□□□□ 0.88
TNFRSF4P43489 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.57■□□□□ 0.88
TNFRSF4P43489 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFRSF4P43489 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.56■□□□□ 0.88
TNFRSF4P43489 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.56■□□□□ 0.88
TNFRSF4P43489 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.56■□□□□ 0.88
TNFRSF4P43489 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TNFRSF4P43489 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TNFRSF4P43489 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.56■□□□□ 0.88
TNFRSF4P43489 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TNFRSF4P43489 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TNFRSF4P43489 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.56■□□□□ 0.88
TNFRSF4P43489 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.56■□□□□ 0.88
TNFRSF4P43489 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TNFRSF4P43489 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.56■□□□□ 0.88
TNFRSF4P43489 REXO1L12P-201ENST00000622156 912 ntBASIC20.56■□□□□ 0.88
TNFRSF4P43489 AL049637.2-201ENST00000641778 930 ntBASIC20.56■□□□□ 0.88
TNFRSF4P43489 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TNFRSF4P43489 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TNFRSF4P43489 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.55■□□□□ 0.88
TNFRSF4P43489 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFRSF4P43489 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
TNFRSF4P43489 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TNFRSF4P43489 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TNFRSF4P43489 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.55■□□□□ 0.88
TNFRSF4P43489 RARRES2P10-201ENST00000564312 460 ntBASIC20.55■□□□□ 0.88
TNFRSF4P43489 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.55■□□□□ 0.88
TNFRSF4P43489 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.55■□□□□ 0.88
TNFRSF4P43489 AL121829.2-201ENST00000620908 328 ntBASIC20.55■□□□□ 0.88
TNFRSF4P43489 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.55■□□□□ 0.88
TNFRSF4P43489 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFRSF4P43489 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFRSF4P43489 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFRSF4P43489 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFRSF4P43489 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFRSF4P43489 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFRSF4P43489 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFRSF4P43489 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TNFRSF4P43489 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFRSF4P43489 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms