Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 TRS130YMR218C 3309 nt2.66□□□□□ -1.98
SSM4P40318 YFR056CYFR056C 369 nt2.66□□□□□ -1.98
SSM4P40318 VAR1Q0140 1197 nt2.66□□□□□ -1.98
SSM4P40318 YBL012CYBL012C 402 nt2.66□□□□□ -1.98
SSM4P40318 YML108WYML108W 318 nt2.66□□□□□ -1.98
SSM4P40318 SPC29YPL124W 762 nt2.66□□□□□ -1.98
SSM4P40318 ATP15YPL271W 189 nt2.66□□□□□ -1.98
SSM4P40318 NAN1YPL126W 2691 nt2.66□□□□□ -1.98
SSM4P40318 YNL018CYNL018C 1839 nt2.66□□□□□ -1.98
SSM4P40318 YEL043WYEL043W 2871 nt2.65□□□□□ -1.98
SSM4P40318 SMY2YBR172C 2223 nt2.65□□□□□ -1.98
SSM4P40318 YJL181WYJL181W 1836 nt2.65□□□□□ -1.99
SSM4P40318 SLM6YBR266C 453 nt2.65□□□□□ -1.99
SSM4P40318 HYP2YEL034W 474 nt2.64□□□□□ -1.99
SSM4P40318 SEN15YMR059W 387 nt2.64□□□□□ -1.99
SSM4P40318 RUF22RUF22 515 nt2.64□□□□□ -1.99
SSM4P40318 DAD3YBR233W-A 285 nt2.64□□□□□ -1.99
SSM4P40318 YBR277CYBR277C 402 nt2.64□□□□□ -1.99
SSM4P40318 DIS3YOL021C 3006 nt2.64□□□□□ -1.99
SSM4P40318 KRE33YNL132W 3171 nt2.64□□□□□ -1.99
SSM4P40318 MUD2YKL074C 1584 nt2.63□□□□□ -1.99
SSM4P40318 UBP11YKR098C 2154 nt2.63□□□□□ -1.99
SSM4P40318 SNU114YKL173W 3027 nt2.63□□□□□ -1.99
SSM4P40318 YDL068WYDL068W 330 nt2.63□□□□□ -1.99
SSM4P40318 YDL118WYDL118W 381 nt2.63□□□□□ -1.99
SSM4P40318 RPC10YHR143W-A 213 nt2.63□□□□□ -1.99
SSM4P40318 NUP82YJL061W 2142 nt2.63□□□□□ -1.99
SSM4P40318 NCE101YJL205C 162 nt2.63□□□□□ -1.99
SSM4P40318 AIM29YKR074W 468 nt2.63□□□□□ -1.99
SSM4P40318 TOM22YNL131W 459 nt2.63□□□□□ -1.99
SSM4P40318 LSM7YNL147W 348 nt2.63□□□□□ -1.99
SSM4P40318 YOR248WYOR248W 303 nt2.63□□□□□ -1.99
SSM4P40318 PTC5YOR090C 1719 nt2.62□□□□□ -1.99
SSM4P40318 SWA2YDR320C 2007 nt2.62□□□□□ -1.99
SSM4P40318 TUS1YLR425W 3924 nt2.62□□□□□ -1.99
SSM4P40318 REV1YOR346W 2958 nt2.62□□□□□ -1.99
SSM4P40318 TWF1YGR080W 999 nt2.62□□□□□ -1.99
SSM4P40318 ECL1YGR146C 636 nt2.62□□□□□ -1.99
SSM4P40318 tT(UGU)Q1tT(UGU)Q1 76 nt2.62□□□□□ -1.99
SSM4P40318 YKL111CYKL111C 336 nt2.62□□□□□ -1.99
SSM4P40318 SHE2YKL130C 741 nt2.62□□□□□ -1.99
SSM4P40318 YKU80YMR106C 1890 nt2.62□□□□□ -1.99
SSM4P40318 RPB5YBR154C 648 nt2.62□□□□□ -1.99
SSM4P40318 snR54snR54 86 nt2.62□□□□□ -1.99
SSM4P40318 RNH70YGR276C 1662 nt2.61□□□□□ -1.99
SSM4P40318 YHR125WYHR125W 306 nt2.61□□□□□ -1.99
SSM4P40318 ANS1YHR126C 480 nt2.61□□□□□ -1.99
SSM4P40318 YJR157WYJR157W 363 nt2.61□□□□□ -1.99
SSM4P40318 ROX1YPR065W 1107 nt2.61□□□□□ -1.99
SSM4P40318 MPH1YIR002C 2982 nt2.61□□□□□ -1.99
SSM4P40318 HMLALPHA2YCL067C 633 nt2.6□□□□□ -1.99
SSM4P40318 MATALPHA2YCR039C 633 nt2.6□□□□□ -1.99
SSM4P40318 FMP16YDR070C 282 nt2.6□□□□□ -1.99
SSM4P40318 IRC19YLL033W 693 nt2.6□□□□□ -1.99
SSM4P40318 TEN1YLR010C 483 nt2.6□□□□□ -1.99
SSM4P40318 YMR052C-AYMR052C-A 366 nt2.6□□□□□ -1.99
SSM4P40318 YOR392WYOR392W 444 nt2.6□□□□□ -1.99
SSM4P40318 NCL1YBL024W 2055 nt2.6□□□□□ -1.99
SSM4P40318 IPT1YDR072C 1584 nt2.59□□□□□ -1.99
SSM4P40318 PEX8YGR077C 1770 nt2.59□□□□□ -1.99
SSM4P40318 ORC2YBR060C 1863 nt2.59□□□□□ -1.99
SSM4P40318 YER188C-AYER188C-A 300 nt2.59□□□□□ -2
SSM4P40318 YGL014C-AYGL014C-A 162 nt2.59□□□□□ -2
SSM4P40318 YLR264C-AYLR264C-A 117 nt2.59□□□□□ -2
SSM4P40318 YMR320WYMR320W 306 nt2.59□□□□□ -2
SSM4P40318 ATP3YBR039W 936 nt2.59□□□□□ -2
SSM4P40318 EDS1YBR033W 2760 nt2.59□□□□□ -2
SSM4P40318 MSL5YLR116W 1431 nt2.58□□□□□ -2
SSM4P40318 YJL070CYJL070C 2667 nt2.58□□□□□ -2
SSM4P40318 IRC20YLR247C 4671 nt2.58□□□□□ -2
SSM4P40318 YDL025W-AYDL025W-A 105 nt2.58□□□□□ -2
SSM4P40318 YNL324WYNL324W 396 nt2.58□□□□□ -2
SSM4P40318 snR41snR41 95 nt2.58□□□□□ -2
SSM4P40318 NUP100YKL068W 2880 nt2.58□□□□□ -2
SSM4P40318 SIR3YLR442C 2937 nt2.57□□□□□ -2
SSM4P40318 YKL063CYKL063C 504 nt2.57□□□□□ -2
SSM4P40318 MCD1YDL003W 1701 nt2.57□□□□□ -2
SSM4P40318 YDR239CYDR239C 2364 nt2.57□□□□□ -2
SSM4P40318 VOA1YGR106C 798 nt2.56□□□□□ -2
SSM4P40318 YHR214W-AYHR214W-A 486 nt2.56□□□□□ -2
SSM4P40318 YLR031WYLR031W 561 nt2.56□□□□□ -2
SSM4P40318 YAR068WYAR068W 486 nt2.56□□□□□ -2
SSM4P40318 YLR269CYLR269C 351 nt2.56□□□□□ -2
SSM4P40318 GRX8YLR364W 330 nt2.56□□□□□ -2
SSM4P40318 CFT1YDR301W 4074 nt2.56□□□□□ -2
SSM4P40318 PPN1YDR452W 2025 nt2.56□□□□□ -2
SSM4P40318 YDR194W-AYDR194W-A 153 nt2.55□□□□□ -2
SSM4P40318 PAU8YAL068C 363 nt2.55□□□□□ -2
SSM4P40318 PAU20YOL161C 363 nt2.55□□□□□ -2
SSM4P40318 ACM1YPL267W 630 nt2.55□□□□□ -2
SSM4P40318 YPR039WYPR039W 336 nt2.55□□□□□ -2
SSM4P40318 VMA9YCL005W-A 222 nt2.55□□□□□ -2
SSM4P40318 FKS1YLR342W 5631 nt2.55□□□□□ -2
SSM4P40318 VPS52YDR484W 1926 nt2.55□□□□□ -2
SSM4P40318 GDS1YOR355W 1569 nt2.55□□□□□ -2
SSM4P40318 SWT1YOR166C 1377 nt2.54□□□□□ -2
SSM4P40318 MZM1YDR493W 372 nt2.54□□□□□ -2
SSM4P40318 SGM1YJR134C 2124 nt2.54□□□□□ -2
SSM4P40318 YLR101CYLR101C 396 nt2.54□□□□□ -2
SSM4P40318 YLR154W-AYLR154W-A 186 nt2.54□□□□□ -2
Retrieved 100 of 7,029 protein–RNA pairs in 13.6 ms