Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.73■□□□□ 0.75
COL5A1P20908 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A1P20908 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A1P20908 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A1P20908 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
COL5A1P20908 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
COL5A1P20908 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A1P20908 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A1P20908 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.72■□□□□ 0.75
COL5A1P20908 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.72■□□□□ 0.75
COL5A1P20908 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
COL5A1P20908 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A1P20908 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.72■□□□□ 0.75
COL5A1P20908 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.72■□□□□ 0.75
COL5A1P20908 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A1P20908 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A1P20908 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A1P20908 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.72■□□□□ 0.75
COL5A1P20908 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
COL5A1P20908 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
COL5A1P20908 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A1P20908 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.72■□□□□ 0.75
COL5A1P20908 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.72■□□□□ 0.75
COL5A1P20908 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.72■□□□□ 0.75
COL5A1P20908 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.72■□□□□ 0.75
COL5A1P20908 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.72■□□□□ 0.75
COL5A1P20908 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.72■□□□□ 0.75
COL5A1P20908 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A1P20908 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
COL5A1P20908 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
COL5A1P20908 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
COL5A1P20908 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
COL5A1P20908 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A1P20908 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.71■□□□□ 0.75
COL5A1P20908 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A1P20908 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A1P20908 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A1P20908 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.71■□□□□ 0.75
COL5A1P20908 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A1P20908 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A1P20908 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.7■□□□□ 0.74
COL5A1P20908 AL353807.1-201ENST00000427475 662 ntBASIC19.7■□□□□ 0.74
COL5A1P20908 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.7■□□□□ 0.74
COL5A1P20908 AC006557.6-201ENST00000623071 864 ntBASIC19.7■□□□□ 0.74
COL5A1P20908 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.7■□□□□ 0.74
COL5A1P20908 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A1P20908 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A1P20908 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A1P20908 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
COL5A1P20908 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.7■□□□□ 0.74
COL5A1P20908 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A1P20908 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A1P20908 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.69■□□□□ 0.74
COL5A1P20908 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A1P20908 TSPY15P-201ENST00000457163 923 ntBASIC19.69■□□□□ 0.74
COL5A1P20908 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.69■□□□□ 0.74
COL5A1P20908 RN7SL850P-201ENST00000579959 291 ntBASIC19.69■□□□□ 0.74
COL5A1P20908 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.69■□□□□ 0.74
COL5A1P20908 AL121829.2-201ENST00000620908 328 ntBASIC19.69■□□□□ 0.74
COL5A1P20908 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.69■□□□□ 0.74
COL5A1P20908 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.69■□□□□ 0.74
COL5A1P20908 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A1P20908 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
COL5A1P20908 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A1P20908 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.69■□□□□ 0.74
COL5A1P20908 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.69■□□□□ 0.74
COL5A1P20908 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.69■□□□□ 0.74
COL5A1P20908 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A1P20908 NUDT16P1-203ENST00000513809 620 ntBASIC19.69■□□□□ 0.74
COL5A1P20908 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.69■□□□□ 0.74
COL5A1P20908 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.69■□□□□ 0.74
COL5A1P20908 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.69■□□□□ 0.74
COL5A1P20908 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A1P20908 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A1P20908 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.69■□□□□ 0.74
COL5A1P20908 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A1P20908 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A1P20908 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A1P20908 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL5A1P20908 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.68■□□□□ 0.74
COL5A1P20908 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 AL353708.3-201ENST00000610272 989 ntBASIC19.68■□□□□ 0.74
COL5A1P20908 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms