Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.25■□□□□ 0.83
MSH3P20585 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH3P20585 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH3P20585 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH3P20585 SLC29A4P1-201ENST00000398760 971 ntBASIC20.25■□□□□ 0.83
MSH3P20585 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.25■□□□□ 0.83
MSH3P20585 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.25■□□□□ 0.83
MSH3P20585 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH3P20585 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH3P20585 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH3P20585 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
MSH3P20585 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH3P20585 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 LINC01521-201ENST00000504184 1943 ntBASIC20.24■□□□□ 0.83
MSH3P20585 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
MSH3P20585 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MSH3P20585 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
MSH3P20585 PGM5P4-201ENST00000421970 445 ntBASIC20.24■□□□□ 0.83
MSH3P20585 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.24■□□□□ 0.83
MSH3P20585 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH3P20585 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH3P20585 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH3P20585 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH3P20585 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH3P20585 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
MSH3P20585 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH3P20585 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH3P20585 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
MSH3P20585 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH3P20585 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
MSH3P20585 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
MSH3P20585 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
MSH3P20585 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH3P20585 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH3P20585 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.23■□□□□ 0.83
MSH3P20585 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.23■□□□□ 0.83
MSH3P20585 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 AL109923.1-201ENST00000618799 583 ntBASIC20.23■□□□□ 0.83
MSH3P20585 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.23■□□□□ 0.83
MSH3P20585 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH3P20585 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH3P20585 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH3P20585 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
MSH3P20585 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
MSH3P20585 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 AL355472.2-201ENST00000422958 438 ntBASIC20.22■□□□□ 0.83
MSH3P20585 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.22■□□□□ 0.83
MSH3P20585 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
MSH3P20585 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.22■□□□□ 0.83
MSH3P20585 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
MSH3P20585 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
MSH3P20585 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.22■□□□□ 0.83
MSH3P20585 CYP2T3P-201ENST00000601990 817 ntBASIC20.22■□□□□ 0.83
MSH3P20585 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
MSH3P20585 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.22■□□□□ 0.83
MSH3P20585 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 FP700111.2-201ENST00000619190 1892 ntBASIC20.22■□□□□ 0.83
MSH3P20585 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MSH3P20585 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH3P20585 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
MSH3P20585 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH3P20585 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
MSH3P20585 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH3P20585 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
MSH3P20585 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH3P20585 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH3P20585 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms