Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A2P08572 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A2P08572 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A2P08572 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A2P08572 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A2P08572 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A2P08572 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A2P08572 AC026471.5-201ENST00000615068 467 ntBASIC20.74■□□□□ 0.91
COL4A2P08572 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A2P08572 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A2P08572 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A2P08572 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A2P08572 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A2P08572 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
COL4A2P08572 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A2P08572 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A2P08572 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A2P08572 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A2P08572 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
COL4A2P08572 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A2P08572 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A2P08572 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A2P08572 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.73■□□□□ 0.91
COL4A2P08572 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A2P08572 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A2P08572 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A2P08572 AL445228.2-201ENST00000605589 952 ntBASIC20.73■□□□□ 0.91
COL4A2P08572 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.73■□□□□ 0.91
COL4A2P08572 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A2P08572 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A2P08572 KRT8P9-201ENST00000558927 1449 ntBASIC20.73■□□□□ 0.91
COL4A2P08572 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A2P08572 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A2P08572 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A2P08572 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A2P08572 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.73■□□□□ 0.91
COL4A2P08572 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.73■□□□□ 0.91
COL4A2P08572 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A2P08572 AL121906.2-201ENST00000621597 723 ntBASIC20.73■□□□□ 0.91
COL4A2P08572 MIR2861-201ENST00000636310 90 ntBASIC20.73■□□□□ 0.91
COL4A2P08572 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
COL4A2P08572 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
COL4A2P08572 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
COL4A2P08572 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 KRT16P5-201ENST00000455284 522 ntBASIC20.72■□□□□ 0.91
COL4A2P08572 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.72■□□□□ 0.91
COL4A2P08572 AP003071.4-201ENST00000562276 1284 ntBASIC20.72■□□□□ 0.91
COL4A2P08572 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.72■□□□□ 0.91
COL4A2P08572 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A2P08572 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A2P08572 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
COL4A2P08572 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.71■□□□□ 0.91
COL4A2P08572 AF186192.3-201ENST00000583427 947 ntBASIC20.71■□□□□ 0.91
COL4A2P08572 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A2P08572 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A2P08572 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
COL4A2P08572 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A2P08572 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A2P08572 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
COL4A2P08572 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A2P08572 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A2P08572 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COL4A2P08572 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A2P08572 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COL4A2P08572 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A2P08572 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.7■□□□□ 0.9
COL4A2P08572 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.7■□□□□ 0.9
COL4A2P08572 CD177P1-201ENST00000606252 935 ntBASIC20.7■□□□□ 0.9
COL4A2P08572 MIR6786-201ENST00000616843 113 ntBASIC20.7■□□□□ 0.9
COL4A2P08572 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A2P08572 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A2P08572 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.7■□□□□ 0.9
COL4A2P08572 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A2P08572 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A2P08572 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A2P08572 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A2P08572 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A2P08572 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A2P08572 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A2P08572 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
COL4A2P08572 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A2P08572 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL4A2P08572 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A2P08572 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A2P08572 AL353807.1-201ENST00000427475 662 ntBASIC20.69■□□□□ 0.9
COL4A2P08572 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.69■□□□□ 0.9
COL4A2P08572 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A2P08572 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.69■□□□□ 0.9
COL4A2P08572 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A2P08572 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A2P08572 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
COL4A2P08572 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms