Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 AC093503.3-201ENST00000624917 2352 ntBASIC15.3■□□□□ 0.04
HLA-DQA1P01909 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 BCL2-203ENST00000589955 5011 ntBASIC15.29■□□□□ 0.04
HLA-DQA1P01909 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.29■□□□□ 0.04
HLA-DQA1P01909 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 AL451085.2-201ENST00000605085 799 ntBASIC15.28■□□□□ 0.04
HLA-DQA1P01909 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DQA1P01909 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 AC009299.2-201ENST00000482477 511 ntBASIC15.27■□□□□ 0.04
HLA-DQA1P01909 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 AC137630.3-201ENST00000607245 391 ntBASIC15.27■□□□□ 0.04
HLA-DQA1P01909 NKILA-201ENST00000613231 537 ntTSL 4 BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
HLA-DQA1P01909 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DQA1P01909 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms