Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TNFP01375 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.95■□□□□ 0.78
TNFP01375 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
TNFP01375 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.94■□□□□ 0.78
TNFP01375 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.94■□□□□ 0.78
TNFP01375 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.94■□□□□ 0.78
TNFP01375 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFP01375 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.94■□□□□ 0.78
TNFP01375 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TNFP01375 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TNFP01375 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFP01375 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFP01375 POM121L13P-201ENST00000422362 380 ntBASIC19.94■□□□□ 0.78
TNFP01375 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.94■□□□□ 0.78
TNFP01375 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFP01375 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.94■□□□□ 0.78
TNFP01375 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TNFP01375 AC005829.2-201ENST00000571422 1056 ntBASIC19.94■□□□□ 0.78
TNFP01375 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.94■□□□□ 0.78
TNFP01375 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFP01375 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFP01375 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TNFP01375 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TNFP01375 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFP01375 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFP01375 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFP01375 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.93■□□□□ 0.78
TNFP01375 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
TNFP01375 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
TNFP01375 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.93■□□□□ 0.78
TNFP01375 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFP01375 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFP01375 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFP01375 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.93■□□□□ 0.78
TNFP01375 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.93■□□□□ 0.78
TNFP01375 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
TNFP01375 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.93■□□□□ 0.78
TNFP01375 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.93■□□□□ 0.78
TNFP01375 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFP01375 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFP01375 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFP01375 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.93■□□□□ 0.78
TNFP01375 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFP01375 KRT8P36-201ENST00000489121 1440 ntBASIC19.93■□□□□ 0.78
TNFP01375 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
TNFP01375 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.92■□□□□ 0.78
TNFP01375 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
TNFP01375 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TNFP01375 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
TNFP01375 C1QBPP2-201ENST00000528754 825 ntBASIC19.92■□□□□ 0.78
TNFP01375 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.92■□□□□ 0.78
TNFP01375 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
TNFP01375 AC006557.6-201ENST00000623071 864 ntBASIC19.92■□□□□ 0.78
TNFP01375 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TNFP01375 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.91■□□□□ 0.78
TNFP01375 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
TNFP01375 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
TNFP01375 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
TNFP01375 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
TNFP01375 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
TNFP01375 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.91■□□□□ 0.78
TNFP01375 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 RN7SL471P-201ENST00000580476 299 ntBASIC19.91■□□□□ 0.78
TNFP01375 AL359736.2-201ENST00000621992 437 ntBASIC19.91■□□□□ 0.78
TNFP01375 FAM197Y4-202ENST00000622692 608 ntBASIC19.91■□□□□ 0.78
TNFP01375 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TNFP01375 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.91■□□□□ 0.78
TNFP01375 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.91■□□□□ 0.78
TNFP01375 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TNFP01375 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.91■□□□□ 0.78
TNFP01375 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TNFP01375 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 FEM1AP4-201ENST00000443167 1987 ntBASIC19.9■□□□□ 0.78
TNFP01375 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms