Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.05■□□□□ 0.32
ABCA1O95477 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA1O95477 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA1O95477 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 KRT17P2-201ENST00000300992 1314 ntBASIC17.05■□□□□ 0.32
ABCA1O95477 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA1O95477 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
ABCA1O95477 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA1O95477 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.05■□□□□ 0.32
ABCA1O95477 AL135905.2-201ENST00000584934 1404 ntBASIC17.04■□□□□ 0.32
ABCA1O95477 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA1O95477 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA1O95477 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
ABCA1O95477 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA1O95477 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.04■□□□□ 0.32
ABCA1O95477 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA1O95477 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
ABCA1O95477 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
ABCA1O95477 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA1O95477 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.04■□□□□ 0.32
ABCA1O95477 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA1O95477 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
ABCA1O95477 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA1O95477 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.04■□□□□ 0.32
ABCA1O95477 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.04■□□□□ 0.32
ABCA1O95477 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA1O95477 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
ABCA1O95477 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
ABCA1O95477 AC233702.5-201ENST00000584107 538 ntBASIC17.04■□□□□ 0.32
ABCA1O95477 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.04■□□□□ 0.32
ABCA1O95477 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.04■□□□□ 0.32
ABCA1O95477 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.04■□□□□ 0.32
ABCA1O95477 AC097493.4-201ENST00000641197 219 ntBASIC17.04■□□□□ 0.32
ABCA1O95477 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ABCA1O95477 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ABCA1O95477 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ABCA1O95477 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.03■□□□□ 0.32
ABCA1O95477 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.03■□□□□ 0.32
ABCA1O95477 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.03■□□□□ 0.32
ABCA1O95477 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
ABCA1O95477 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 RPS2P55-201ENST00000397318 883 ntBASIC17.03■□□□□ 0.32
ABCA1O95477 AC239809.2-201ENST00000415381 517 ntBASIC17.03■□□□□ 0.32
ABCA1O95477 AC107956.1-201ENST00000494359 873 ntBASIC17.03■□□□□ 0.32
ABCA1O95477 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.03■□□□□ 0.32
ABCA1O95477 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.03■□□□□ 0.32
ABCA1O95477 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ABCA1O95477 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
ABCA1O95477 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA1O95477 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCA1O95477 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA1O95477 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA1O95477 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA1O95477 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA1O95477 KRT18P21-201ENST00000515767 1272 ntBASIC17.02■□□□□ 0.32
ABCA1O95477 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.02■□□□□ 0.32
ABCA1O95477 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.02■□□□□ 0.32
ABCA1O95477 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA1O95477 AC124016.1-201ENST00000609552 612 ntBASIC17.02■□□□□ 0.32
ABCA1O95477 AC133561.5-201ENST00000635547 218 ntBASIC17.02■□□□□ 0.32
ABCA1O95477 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA1O95477 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA1O95477 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
ABCA1O95477 AC079834.2-201ENST00000609776 1949 ntBASIC17.02■□□□□ 0.32
ABCA1O95477 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.02■□□□□ 0.32
ABCA1O95477 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.02■□□□□ 0.32
ABCA1O95477 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
ABCA1O95477 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
ABCA1O95477 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
ABCA1O95477 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.02■□□□□ 0.31
ABCA1O95477 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.02■□□□□ 0.31
ABCA1O95477 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ABCA1O95477 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.01■□□□□ 0.31
ABCA1O95477 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.01■□□□□ 0.31
ABCA1O95477 MIR4785-201ENST00000585005 73 ntBASIC17.01■□□□□ 0.31
ABCA1O95477 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
ABCA1O95477 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
ABCA1O95477 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms