Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PRKNO60260 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.97■□□□□ 0.63
PRKNO60260 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
PRKNO60260 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PRKNO60260 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PRKNO60260 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.97■□□□□ 0.63
PRKNO60260 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PRKNO60260 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
PRKNO60260 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.96■□□□□ 0.63
PRKNO60260 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
PRKNO60260 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PRKNO60260 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.96■□□□□ 0.63
PRKNO60260 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
PRKNO60260 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PRKNO60260 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
PRKNO60260 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
PRKNO60260 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.96■□□□□ 0.63
PRKNO60260 KRT18P6-201ENST00000555540 1265 ntBASIC18.96■□□□□ 0.63
PRKNO60260 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.96■□□□□ 0.63
PRKNO60260 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.96■□□□□ 0.63
PRKNO60260 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
PRKNO60260 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PRKNO60260 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PRKNO60260 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.96■□□□□ 0.63
PRKNO60260 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.96■□□□□ 0.63
PRKNO60260 AC027702.1-201ENST00000563810 1770 ntBASIC18.96■□□□□ 0.63
PRKNO60260 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PRKNO60260 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.95■□□□□ 0.62
PRKNO60260 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.95■□□□□ 0.62
PRKNO60260 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.95■□□□□ 0.62
PRKNO60260 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.95■□□□□ 0.62
PRKNO60260 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.95■□□□□ 0.62
PRKNO60260 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.95■□□□□ 0.62
PRKNO60260 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.95■□□□□ 0.62
PRKNO60260 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.95■□□□□ 0.62
PRKNO60260 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PRKNO60260 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
PRKNO60260 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PRKNO60260 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PRKNO60260 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PRKNO60260 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PRKNO60260 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.94■□□□□ 0.62
PRKNO60260 AC087633.2-202ENST00000565166 1439 ntBASIC18.94■□□□□ 0.62
PRKNO60260 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
PRKNO60260 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
PRKNO60260 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.94■□□□□ 0.62
PRKNO60260 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.94■□□□□ 0.62
PRKNO60260 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.94■□□□□ 0.62
PRKNO60260 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.94■□□□□ 0.62
PRKNO60260 AL589743.5-201ENST00000616611 1050 ntBASIC18.94■□□□□ 0.62
PRKNO60260 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.94■□□□□ 0.62
PRKNO60260 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.94■□□□□ 0.62
PRKNO60260 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 AL157384.1-201ENST00000445995 2473 ntBASIC18.94■□□□□ 0.62
PRKNO60260 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.94■□□□□ 0.62
PRKNO60260 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PRKNO60260 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.93■□□□□ 0.62
PRKNO60260 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PRKNO60260 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.93■□□□□ 0.62
PRKNO60260 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.93■□□□□ 0.62
PRKNO60260 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PRKNO60260 AC097658.1-201ENST00000475555 843 ntBASIC18.93■□□□□ 0.62
PRKNO60260 AC105020.6-201ENST00000621523 1217 ntBASIC18.93■□□□□ 0.62
PRKNO60260 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.93■□□□□ 0.62
PRKNO60260 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PRKNO60260 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
PRKNO60260 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PRKNO60260 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.92■□□□□ 0.62
PRKNO60260 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
PRKNO60260 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms