Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
NPHP1O15259 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
NPHP1O15259 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
NPHP1O15259 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC25.69■■□□□ 1.7
NPHP1O15259 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC25.69■■□□□ 1.7
NPHP1O15259 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC25.69■■□□□ 1.7
NPHP1O15259 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC25.68■■□□□ 1.7
NPHP1O15259 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC25.68■■□□□ 1.7
NPHP1O15259 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 AC133681.1-201ENST00000465482 601 ntBASIC25.68■■□□□ 1.7
NPHP1O15259 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC25.68■■□□□ 1.7
NPHP1O15259 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC25.68■■□□□ 1.7
NPHP1O15259 AC133561.5-201ENST00000635547 218 ntBASIC25.68■■□□□ 1.7
NPHP1O15259 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.68■■□□□ 1.7
NPHP1O15259 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
NPHP1O15259 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP1O15259 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP1O15259 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
NPHP1O15259 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC25.67■■□□□ 1.7
NPHP1O15259 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC25.67■■□□□ 1.7
NPHP1O15259 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP1O15259 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP1O15259 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP1O15259 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP1O15259 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC25.67■■□□□ 1.7
NPHP1O15259 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
NPHP1O15259 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
NPHP1O15259 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP1O15259 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
NPHP1O15259 CABP2-204ENST00000636477 941 ntTSL 5 BASIC25.67■■□□□ 1.7
NPHP1O15259 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP1O15259 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP1O15259 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP1O15259 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
NPHP1O15259 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP1O15259 RER1-204ENST00000378518 522 ntTSL 3 BASIC25.66■■□□□ 1.7
NPHP1O15259 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC25.66■■□□□ 1.7
NPHP1O15259 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP1O15259 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
NPHP1O15259 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC25.66■■□□□ 1.7
NPHP1O15259 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC25.66■■□□□ 1.7
NPHP1O15259 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC25.66■■□□□ 1.7
NPHP1O15259 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC25.66■■□□□ 1.7
NPHP1O15259 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
NPHP1O15259 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP1O15259 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP1O15259 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP1O15259 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP1O15259 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
NPHP1O15259 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
NPHP1O15259 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC25.65■■□□□ 1.7
NPHP1O15259 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC25.65■■□□□ 1.7
NPHP1O15259 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC25.65■■□□□ 1.7
NPHP1O15259 PRKY-204ENST00000533551 1019 ntBASIC25.65■■□□□ 1.7
NPHP1O15259 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC25.65■■□□□ 1.7
NPHP1O15259 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP1O15259 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP1O15259 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP1O15259 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP1O15259 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP1O15259 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP1O15259 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC25.64■■□□□ 1.7
NPHP1O15259 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP1O15259 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP1O15259 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP1O15259 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP1O15259 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC25.64■■□□□ 1.7
NPHP1O15259 AL356652.1-201ENST00000615962 565 ntBASIC25.64■■□□□ 1.7
NPHP1O15259 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
NPHP1O15259 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC25.64■■□□□ 1.69
NPHP1O15259 CLDN5-201ENST00000403084 2357 ntBASIC25.63■■□□□ 1.69
NPHP1O15259 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC25.63■■□□□ 1.69
NPHP1O15259 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC25.63■■□□□ 1.69
NPHP1O15259 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
NPHP1O15259 ME2-206ENST00000638410 2289 ntTSL 5 BASIC25.63■■□□□ 1.69
NPHP1O15259 ME2-210ENST00000639255 2262 ntTSL 5 BASIC25.63■■□□□ 1.69
NPHP1O15259 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP1O15259 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms