Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.28■□□□□ 0.36
SDCBPO00560 AC053503.5-201ENST00000601508 636 ntBASIC17.28■□□□□ 0.36
SDCBPO00560 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SDCBPO00560 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SDCBPO00560 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.28■□□□□ 0.36
SDCBPO00560 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SDCBPO00560 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SDCBPO00560 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SDCBPO00560 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.27■□□□□ 0.36
SDCBPO00560 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDCBPO00560 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SDCBPO00560 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDCBPO00560 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDCBPO00560 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SDCBPO00560 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SDCBPO00560 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDCBPO00560 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SDCBPO00560 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.27■□□□□ 0.36
SDCBPO00560 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SDCBPO00560 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDCBPO00560 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.27■□□□□ 0.36
SDCBPO00560 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
SDCBPO00560 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDCBPO00560 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDCBPO00560 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
SDCBPO00560 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SDCBPO00560 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SDCBPO00560 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.26■□□□□ 0.35
SDCBPO00560 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 KRT87P-202ENST00000534226 1464 ntBASIC17.26■□□□□ 0.35
SDCBPO00560 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SDCBPO00560 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC17.26■□□□□ 0.35
SDCBPO00560 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC17.26■□□□□ 0.35
SDCBPO00560 EEF1DP3-203ENST00000566025 782 ntBASIC17.26■□□□□ 0.35
SDCBPO00560 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.26■□□□□ 0.35
SDCBPO00560 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 LINC02228-203ENST00000641970 1355 ntBASIC17.26■□□□□ 0.35
SDCBPO00560 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.26■□□□□ 0.35
SDCBPO00560 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SDCBPO00560 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
SDCBPO00560 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDCBPO00560 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
SDCBPO00560 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.25■□□□□ 0.35
SDCBPO00560 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.25■□□□□ 0.35
SDCBPO00560 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDCBPO00560 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDCBPO00560 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDCBPO00560 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDCBPO00560 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.25■□□□□ 0.35
SDCBPO00560 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDCBPO00560 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SDCBPO00560 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDCBPO00560 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.25■□□□□ 0.35
SDCBPO00560 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SDCBPO00560 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SDCBPO00560 AC011484.1-201ENST00000377652 1995 ntBASIC17.24■□□□□ 0.35
SDCBPO00560 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDCBPO00560 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SDCBPO00560 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDCBPO00560 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SDCBPO00560 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SDCBPO00560 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDCBPO00560 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SDCBPO00560 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
SDCBPO00560 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDCBPO00560 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SDCBPO00560 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
SDCBPO00560 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.24■□□□□ 0.35
SDCBPO00560 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.23■□□□□ 0.35
SDCBPO00560 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC17.23■□□□□ 0.35
SDCBPO00560 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.23■□□□□ 0.35
SDCBPO00560 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
SDCBPO00560 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SDCBPO00560 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.23■□□□□ 0.35
SDCBPO00560 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.23■□□□□ 0.35
SDCBPO00560 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.23■□□□□ 0.35
SDCBPO00560 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.23■□□□□ 0.35
SDCBPO00560 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SDCBPO00560 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms