Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.84■■□□□ 1.09
FOXN3O00409 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.84■■□□□ 1.09
FOXN3O00409 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.84■■□□□ 1.09
FOXN3O00409 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
FOXN3O00409 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
FOXN3O00409 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
FOXN3O00409 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.84■■□□□ 1.09
FOXN3O00409 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
FOXN3O00409 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.84■■□□□ 1.09
FOXN3O00409 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
FOXN3O00409 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.83■■□□□ 1.09
FOXN3O00409 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.83■■□□□ 1.09
FOXN3O00409 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
FOXN3O00409 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
FOXN3O00409 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
FOXN3O00409 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.83■■□□□ 1.09
FOXN3O00409 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
FOXN3O00409 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
FOXN3O00409 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.83■■□□□ 1.09
FOXN3O00409 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
FOXN3O00409 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.83■■□□□ 1.08
FOXN3O00409 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
FOXN3O00409 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 AC099778.1-201ENST00000568593 1911 ntBASIC21.82■■□□□ 1.08
FOXN3O00409 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.82■■□□□ 1.08
FOXN3O00409 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.82■■□□□ 1.08
FOXN3O00409 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.82■■□□□ 1.08
FOXN3O00409 AL162412.1-201ENST00000567129 965 ntBASIC21.82■■□□□ 1.08
FOXN3O00409 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.82■■□□□ 1.08
FOXN3O00409 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
FOXN3O00409 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.82■■□□□ 1.08
FOXN3O00409 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXN3O00409 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.81■■□□□ 1.08
FOXN3O00409 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 AC068338.2-201ENST00000563278 1430 ntBASIC21.81■■□□□ 1.08
FOXN3O00409 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 SMG8-203ENST00000578922 2178 ntBASIC21.81■■□□□ 1.08
FOXN3O00409 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.81■■□□□ 1.08
FOXN3O00409 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
FOXN3O00409 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.81■■□□□ 1.08
FOXN3O00409 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.81■■□□□ 1.08
FOXN3O00409 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.81■■□□□ 1.08
FOXN3O00409 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
FOXN3O00409 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.8■■□□□ 1.08
FOXN3O00409 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.8■■□□□ 1.08
FOXN3O00409 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.8■■□□□ 1.08
FOXN3O00409 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.8■■□□□ 1.08
FOXN3O00409 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.8■■□□□ 1.08
FOXN3O00409 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.8■■□□□ 1.08
FOXN3O00409 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.8■■□□□ 1.08
FOXN3O00409 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
FOXN3O00409 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
FOXN3O00409 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.8■■□□□ 1.08
FOXN3O00409 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.8■■□□□ 1.08
FOXN3O00409 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.8■■□□□ 1.08
FOXN3O00409 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
FOXN3O00409 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
FOXN3O00409 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXN3O00409 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.79■■□□□ 1.08
FOXN3O00409 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.79■■□□□ 1.08
FOXN3O00409 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
FOXN3O00409 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
FOXN3O00409 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms