Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CBX4O00257 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CBX4O00257 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CBX4O00257 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CBX4O00257 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CBX4O00257 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.83■□□□□ 0.93
CBX4O00257 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.83■□□□□ 0.93
CBX4O00257 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CBX4O00257 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CBX4O00257 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.83■□□□□ 0.92
CBX4O00257 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CBX4O00257 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.82■□□□□ 0.92
CBX4O00257 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CBX4O00257 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CBX4O00257 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.82■□□□□ 0.92
CBX4O00257 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.82■□□□□ 0.92
CBX4O00257 AC008687.6-201ENST00000596318 630 ntBASIC20.82■□□□□ 0.92
CBX4O00257 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CBX4O00257 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.82■□□□□ 0.92
CBX4O00257 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CBX4O00257 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.82■□□□□ 0.92
CBX4O00257 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CBX4O00257 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CBX4O00257 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.81■□□□□ 0.92
CBX4O00257 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.81■□□□□ 0.92
CBX4O00257 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.81■□□□□ 0.92
CBX4O00257 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CBX4O00257 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 MIR2861-201ENST00000636310 90 ntBASIC20.81■□□□□ 0.92
CBX4O00257 MYC-209ENST00000641252 345 ntBASIC20.81■□□□□ 0.92
CBX4O00257 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.81■□□□□ 0.92
CBX4O00257 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CBX4O00257 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CBX4O00257 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CBX4O00257 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.81■□□□□ 0.92
CBX4O00257 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.81■□□□□ 0.92
CBX4O00257 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 FP700111.2-201ENST00000619190 1892 ntBASIC20.8■□□□□ 0.92
CBX4O00257 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CBX4O00257 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.8■□□□□ 0.92
CBX4O00257 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.8■□□□□ 0.92
CBX4O00257 AC083880.1-201ENST00000608266 535 ntBASIC20.8■□□□□ 0.92
CBX4O00257 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CBX4O00257 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CBX4O00257 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CBX4O00257 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CBX4O00257 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.8■□□□□ 0.92
CBX4O00257 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CBX4O00257 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.79■□□□□ 0.92
CBX4O00257 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.79■□□□□ 0.92
CBX4O00257 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
CBX4O00257 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.79■□□□□ 0.92
CBX4O00257 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.79■□□□□ 0.92
CBX4O00257 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.79■□□□□ 0.92
CBX4O00257 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.79■□□□□ 0.92
CBX4O00257 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CBX4O00257 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CBX4O00257 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CBX4O00257 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
CBX4O00257 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.78■□□□□ 0.92
CBX4O00257 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.78■□□□□ 0.92
CBX4O00257 AC093827.2-201ENST00000512654 315 ntBASIC20.78■□□□□ 0.92
CBX4O00257 RNA5SP413-201ENST00000516373 109 ntBASIC20.78■□□□□ 0.92
CBX4O00257 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
CBX4O00257 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CBX4O00257 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms