Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 SYT6-210ENST00000641643 1587 ntBASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
USH1CQ9Y6N9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USH1CQ9Y6N9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USH1CQ9Y6N9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 AC125437.2-201ENST00000625180 2167 ntBASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USH1CQ9Y6N9 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 AL158211.5-201ENST00000623583 2518 ntBASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
USH1CQ9Y6N9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 AC011298.3-201ENST00000615796 283 ntBASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 AC004408.2-201ENST00000623613 2777 ntBASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
USH1CQ9Y6N9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.22■□□□□ 0.83
USH1CQ9Y6N9 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms