Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.68
ATG4BQ9Y4P1 LINC01006-201ENST00000333319 2292 ntBASIC19.33■□□□□ 0.68
ATG4BQ9Y4P1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.33■□□□□ 0.68
ATG4BQ9Y4P1 AP005212.1-201ENST00000581547 1997 ntBASIC19.33■□□□□ 0.68
ATG4BQ9Y4P1 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ATG4BQ9Y4P1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.33■□□□□ 0.68
ATG4BQ9Y4P1 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.33■□□□□ 0.68
ATG4BQ9Y4P1 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.33■□□□□ 0.68
ATG4BQ9Y4P1 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 CYP21A1P-202ENST00000354927 1481 ntBASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
ATG4BQ9Y4P1 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 AC069236.1-201ENST00000604339 616 ntBASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 AC008694.1-202ENST00000636953 945 ntBASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4BQ9Y4P1 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 AL050303.2-201ENST00000619798 666 ntBASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.3■□□□□ 0.68
ATG4BQ9Y4P1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 CROCCP5-201ENST00000436658 830 ntBASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 OR10C1-204ENST00000622521 1039 ntBASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
ATG4BQ9Y4P1 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 KRT8P36-201ENST00000489121 1440 ntBASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms