Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 AC092368.3-202ENST00000574180 1591 ntBASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 PRORSD1P-201ENST00000295112 541 ntBASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CLCF1Q9UBD9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 AC027702.1-201ENST00000563810 1770 ntBASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLCF1Q9UBD9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 AC008687.6-201ENST00000596318 630 ntBASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 AC006058.3-201ENST00000606217 1069 ntBASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 FEM1AP4-201ENST00000443167 1987 ntBASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLCF1Q9UBD9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 AC008403.3-201ENST00000598924 454 ntBASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLCF1Q9UBD9 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
CLCF1Q9UBD9 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CLCF1Q9UBD9 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CLCF1Q9UBD9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CLCF1Q9UBD9 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLCF1Q9UBD9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLCF1Q9UBD9 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms