Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCX3AQ9NNX9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 MIR4281-201ENST00000580852 62 ntBASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.06■□□□□ 0.64
VCX3AQ9NNX9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 RPS2P35-201ENST00000443417 897 ntBASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 DUX4L9-201ENST00000449051 1259 ntBASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCX3AQ9NNX9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.04■□□□□ 0.64
VCX3AQ9NNX9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 AC079598.2-202ENST00000546624 1451 ntBASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 AC019171.1-201ENST00000601251 1056 ntBASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
VCX3AQ9NNX9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 AL162377.1-201ENST00000618844 1793 ntBASIC19.02■□□□□ 0.64
VCX3AQ9NNX9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.02■□□□□ 0.63
VCX3AQ9NNX9 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VCX3AQ9NNX9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms