Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CCDC28BQ9BUN5 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC28BQ9BUN5 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC28BQ9BUN5 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC28BQ9BUN5 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 UNC93B3-201ENST00000308076 687 ntBASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 MIR2861-201ENST00000636310 90 ntBASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC28BQ9BUN5 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms