Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PVRIG2P-201ENST00000435460 978 ntBASIC18.02■□□□□ 0.47
COL12A1Q99715 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.02■□□□□ 0.47
COL12A1Q99715 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL12A1Q99715 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.02■□□□□ 0.47
COL12A1Q99715 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.02■□□□□ 0.47
COL12A1Q99715 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.02■□□□□ 0.47
COL12A1Q99715 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.02■□□□□ 0.47
COL12A1Q99715 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL12A1Q99715 AL353807.1-201ENST00000427475 662 ntBASIC18.01■□□□□ 0.47
COL12A1Q99715 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.01■□□□□ 0.47
COL12A1Q99715 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.01■□□□□ 0.47
COL12A1Q99715 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.01■□□□□ 0.47
COL12A1Q99715 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL12A1Q99715 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
COL12A1Q99715 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL12A1Q99715 AC087742.1-201ENST00000575880 1738 ntBASIC18.01■□□□□ 0.47
COL12A1Q99715 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
COL12A1Q99715 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL12A1Q99715 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.01■□□□□ 0.47
COL12A1Q99715 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.01■□□□□ 0.47
COL12A1Q99715 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL12A1Q99715 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL12A1Q99715 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL12A1Q99715 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL12A1Q99715 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL12A1Q99715 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
COL12A1Q99715 AC091799.1-201ENST00000422823 811 ntBASIC18■□□□□ 0.47
COL12A1Q99715 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL12A1Q99715 FITM1-202ENST00000559294 800 ntBASIC18■□□□□ 0.47
COL12A1Q99715 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18■□□□□ 0.47
COL12A1Q99715 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18■□□□□ 0.47
COL12A1Q99715 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18■□□□□ 0.47
COL12A1Q99715 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18■□□□□ 0.47
COL12A1Q99715 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL12A1Q99715 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL12A1Q99715 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18■□□□□ 0.47
COL12A1Q99715 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
COL12A1Q99715 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.99■□□□□ 0.47
COL12A1Q99715 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.99■□□□□ 0.47
COL12A1Q99715 FAM8A6P-201ENST00000407496 1135 ntBASIC17.99■□□□□ 0.47
COL12A1Q99715 ATP5G1P1-201ENST00000448724 379 ntBASIC17.99■□□□□ 0.47
COL12A1Q99715 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.99■□□□□ 0.47
COL12A1Q99715 AC073195.1-201ENST00000607241 877 ntBASIC17.99■□□□□ 0.47
COL12A1Q99715 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
COL12A1Q99715 AC093323.1-202ENST00000635031 2045 ntBASIC17.99■□□□□ 0.47
COL12A1Q99715 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
COL12A1Q99715 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL12A1Q99715 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL12A1Q99715 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.98■□□□□ 0.47
COL12A1Q99715 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.98■□□□□ 0.47
COL12A1Q99715 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.98■□□□□ 0.47
COL12A1Q99715 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.98■□□□□ 0.47
COL12A1Q99715 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.98■□□□□ 0.47
COL12A1Q99715 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.98■□□□□ 0.47
COL12A1Q99715 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.98■□□□□ 0.47
COL12A1Q99715 AC246785.2-201ENST00000432512 513 ntBASIC17.98■□□□□ 0.47
COL12A1Q99715 KRT16P5-201ENST00000455284 522 ntBASIC17.98■□□□□ 0.47
COL12A1Q99715 CLEC4GP1-201ENST00000596555 870 ntBASIC17.98■□□□□ 0.47
COL12A1Q99715 AC006538.3-201ENST00000612495 578 ntBASIC17.98■□□□□ 0.47
COL12A1Q99715 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL12A1Q99715 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.97■□□□□ 0.47
COL12A1Q99715 KRT8P10-201ENST00000450021 1447 ntBASIC17.97■□□□□ 0.47
COL12A1Q99715 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
COL12A1Q99715 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.97■□□□□ 0.47
COL12A1Q99715 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.97■□□□□ 0.47
COL12A1Q99715 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL12A1Q99715 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.97■□□□□ 0.47
COL12A1Q99715 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL12A1Q99715 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.96■□□□□ 0.47
COL12A1Q99715 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
COL12A1Q99715 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL12A1Q99715 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL12A1Q99715 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.96■□□□□ 0.47
COL12A1Q99715 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.96■□□□□ 0.47
COL12A1Q99715 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC17.96■□□□□ 0.47
COL12A1Q99715 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.96■□□□□ 0.47
COL12A1Q99715 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL12A1Q99715 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms