Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 C2orf69P4-201ENST00000565394 541 ntBASIC21.86■■□□□ 1.09
ZNF560Q96MR9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF560Q96MR9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 KRT8P36-201ENST00000489121 1440 ntBASIC21.85■■□□□ 1.09
ZNF560Q96MR9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
ZNF560Q96MR9 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.84■■□□□ 1.09
ZNF560Q96MR9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 AC006128.1-201ENST00000624704 1661 ntBASIC21.84■■□□□ 1.09
ZNF560Q96MR9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
ZNF560Q96MR9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 AC060766.5-201ENST00000590539 871 ntBASIC21.83■■□□□ 1.09
ZNF560Q96MR9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF560Q96MR9 HLA-B-256ENST00000639848 1089 ntBASIC21.83■■□□□ 1.09
ZNF560Q96MR9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
ZNF560Q96MR9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.83■■□□□ 1.08
ZNF560Q96MR9 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
ZNF560Q96MR9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
ZNF560Q96MR9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
ZNF560Q96MR9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 AC005229.4-201ENST00000610085 2198 ntBASIC21.82■■□□□ 1.08
ZNF560Q96MR9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF560Q96MR9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms