Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC27.08■■□□□ 1.93
USHBP1Q8N6Y0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.92
USHBP1Q8N6Y0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 RPS2P55-201ENST00000397318 883 ntBASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 KRASP1-201ENST00000407852 552 ntBASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 AC107956.1-201ENST00000494359 873 ntBASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
USHBP1Q8N6Y0 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 AC211429.1-201ENST00000415277 523 ntBASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 AC233702.5-201ENST00000584107 538 ntBASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
USHBP1Q8N6Y0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 TSPY15P-201ENST00000457163 923 ntBASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
USHBP1Q8N6Y0 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 PGM5P4-201ENST00000421970 445 ntBASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 ABHD17AP6-201ENST00000458502 1044 ntBASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 AC133681.1-201ENST00000465482 601 ntBASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC27.04■■□□□ 1.92
USHBP1Q8N6Y0 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 AC012618.2-201ENST00000428058 849 ntBASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC27.03■■□□□ 1.92
USHBP1Q8N6Y0 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 REXO1L12P-201ENST00000622156 912 ntBASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC27.02■■□□□ 1.92
USHBP1Q8N6Y0 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.92
USHBP1Q8N6Y0 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC27.01■■□□□ 1.92
USHBP1Q8N6Y0 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
USHBP1Q8N6Y0 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms