Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20■□□□□ 0.79
VRK3Q8IV63 AC087633.2-202ENST00000565166 1439 ntBASIC20■□□□□ 0.79
VRK3Q8IV63 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
VRK3Q8IV63 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VRK3Q8IV63 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VRK3Q8IV63 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VRK3Q8IV63 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 MCRIP2P1-201ENST00000394346 511 ntBASIC19.99■□□□□ 0.79
VRK3Q8IV63 AL512625.2-201ENST00000417533 625 ntBASIC19.99■□□□□ 0.79
VRK3Q8IV63 NCF1B-203ENST00000435988 1254 ntBASIC19.99■□□□□ 0.79
VRK3Q8IV63 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 AC083906.2-201ENST00000511578 360 ntBASIC19.99■□□□□ 0.79
VRK3Q8IV63 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 AC100791.3-201ENST00000617619 330 ntBASIC19.99■□□□□ 0.79
VRK3Q8IV63 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VRK3Q8IV63 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.99■□□□□ 0.79
VRK3Q8IV63 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VRK3Q8IV63 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
VRK3Q8IV63 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VRK3Q8IV63 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VRK3Q8IV63 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VRK3Q8IV63 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VRK3Q8IV63 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VRK3Q8IV63 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VRK3Q8IV63 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 LINC01006-201ENST00000333319 2292 ntBASIC19.98■□□□□ 0.79
VRK3Q8IV63 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 KRT8P36-201ENST00000489121 1440 ntBASIC19.98■□□□□ 0.79
VRK3Q8IV63 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VRK3Q8IV63 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VRK3Q8IV63 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VRK3Q8IV63 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
VRK3Q8IV63 AP005212.1-201ENST00000581547 1997 ntBASIC19.97■□□□□ 0.79
VRK3Q8IV63 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.97■□□□□ 0.79
VRK3Q8IV63 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
VRK3Q8IV63 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.97■□□□□ 0.79
VRK3Q8IV63 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 GUSBP6-202ENST00000438529 1198 ntBASIC19.97■□□□□ 0.79
VRK3Q8IV63 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.97■□□□□ 0.79
VRK3Q8IV63 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.97■□□□□ 0.79
VRK3Q8IV63 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
VRK3Q8IV63 CYP2T3P-201ENST00000601990 817 ntBASIC19.97■□□□□ 0.79
VRK3Q8IV63 AL121832.2-201ENST00000610979 668 ntBASIC19.97■□□□□ 0.79
VRK3Q8IV63 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.97■□□□□ 0.79
VRK3Q8IV63 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.97■□□□□ 0.79
VRK3Q8IV63 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 KRT17P1-201ENST00000399211 1546 ntBASIC19.97■□□□□ 0.79
VRK3Q8IV63 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VRK3Q8IV63 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VRK3Q8IV63 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
VRK3Q8IV63 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VRK3Q8IV63 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
VRK3Q8IV63 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VRK3Q8IV63 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 AL356652.1-201ENST00000615962 565 ntBASIC19.96■□□□□ 0.79
VRK3Q8IV63 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
VRK3Q8IV63 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VRK3Q8IV63 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 MKRN4P-201ENST00000444706 1521 ntBASIC19.96■□□□□ 0.79
VRK3Q8IV63 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VRK3Q8IV63 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
VRK3Q8IV63 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VRK3Q8IV63 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
VRK3Q8IV63 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.95■□□□□ 0.79
VRK3Q8IV63 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.95■□□□□ 0.78
VRK3Q8IV63 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VRK3Q8IV63 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
VRK3Q8IV63 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms