Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC120498.8-201ENST00000614275 531 ntBASIC25.2■■□□□ 1.62
CCDC88AQ3V6T2 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC88AQ3V6T2 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.2■■□□□ 1.62
CCDC88AQ3V6T2 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC88AQ3V6T2 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC88AQ3V6T2 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC25.2■■□□□ 1.62
CCDC88AQ3V6T2 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 GGT1-206ENST00000404223 952 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 RBM42-202ENST00000586618 771 ntTSL 3 BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC88AQ3V6T2 STX5-203ENST00000394690 1568 ntTSL 5 BASIC25.18■■□□□ 1.62
CCDC88AQ3V6T2 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC88AQ3V6T2 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC88AQ3V6T2 KRT18P57-201ENST00000443599 1254 ntBASIC25.18■■□□□ 1.62
CCDC88AQ3V6T2 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC88AQ3V6T2 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC25.18■■□□□ 1.62
CCDC88AQ3V6T2 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
CCDC88AQ3V6T2 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC88AQ3V6T2 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
CCDC88AQ3V6T2 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 AC005521.1-201ENST00000393351 872 ntBASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 AC113347.1-201ENST00000413321 391 ntBASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 AL356652.1-201ENST00000615962 565 ntBASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 ARMC10P1-201ENST00000313754 855 ntBASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 NT5C-211ENST00000582170 653 ntTSL 3 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 AC026471.5-201ENST00000615068 467 ntBASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 GOLGA2P6-201ENST00000340929 2049 ntBASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC88AQ3V6T2 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC25.16■■□□□ 1.62
CCDC88AQ3V6T2 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC88AQ3V6T2 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC25.16■■□□□ 1.62
CCDC88AQ3V6T2 Six3os1_6.1-201ENST00000620790 196 ntBASIC25.16■■□□□ 1.62
CCDC88AQ3V6T2 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC88AQ3V6T2 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC88AQ3V6T2 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC88AQ3V6T2 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC88AQ3V6T2 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 AC012676.1-201ENST00000574705 1949 ntBASIC25.15■■□□□ 1.62
CCDC88AQ3V6T2 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms