Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 TERF1P5-201ENST00000477545 1207 ntBASIC16.4■□□□□ 0.22
CX3CL1P78423 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC16.4■□□□□ 0.22
CX3CL1P78423 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC16.4■□□□□ 0.22
CX3CL1P78423 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC16.4■□□□□ 0.22
CX3CL1P78423 MFSD11-216ENST00000590393 1141 ntBASIC16.4■□□□□ 0.22
CX3CL1P78423 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CX3CL1P78423 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.4■□□□□ 0.22
CX3CL1P78423 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 AC011484.1-201ENST00000377652 1995 ntBASIC16.4■□□□□ 0.22
CX3CL1P78423 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC16.4■□□□□ 0.22
CX3CL1P78423 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
CX3CL1P78423 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CX3CL1P78423 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CL1P78423 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CX3CL1P78423 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CL1P78423 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CL1P78423 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CL1P78423 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CX3CL1P78423 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.39■□□□□ 0.21
CX3CL1P78423 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CL1P78423 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.39■□□□□ 0.21
CX3CL1P78423 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC16.39■□□□□ 0.21
CX3CL1P78423 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC16.39■□□□□ 0.21
CX3CL1P78423 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC16.39■□□□□ 0.21
CX3CL1P78423 AC011767.1-201ENST00000617410 1153 ntBASIC16.39■□□□□ 0.21
CX3CL1P78423 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CL1P78423 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CX3CL1P78423 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.39■□□□□ 0.21
CX3CL1P78423 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CL1P78423 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CX3CL1P78423 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CL1P78423 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CX3CL1P78423 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CX3CL1P78423 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
CX3CL1P78423 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CX3CL1P78423 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CL1P78423 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CX3CL1P78423 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
CX3CL1P78423 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
CX3CL1P78423 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CX3CL1P78423 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.38■□□□□ 0.21
CX3CL1P78423 AC091799.1-201ENST00000422823 811 ntBASIC16.38■□□□□ 0.21
CX3CL1P78423 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.38■□□□□ 0.21
CX3CL1P78423 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 BID-214ENST00000617586 542 ntTSL 5 BASIC16.38■□□□□ 0.21
CX3CL1P78423 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.38■□□□□ 0.21
CX3CL1P78423 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC16.38■□□□□ 0.21
CX3CL1P78423 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
CX3CL1P78423 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.38■□□□□ 0.21
CX3CL1P78423 GAS2L1P2-201ENST00000436355 1356 ntBASIC16.38■□□□□ 0.21
CX3CL1P78423 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CX3CL1P78423 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.37■□□□□ 0.21
CX3CL1P78423 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CX3CL1P78423 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CX3CL1P78423 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CX3CL1P78423 AC006128.1-201ENST00000624704 1661 ntBASIC16.37■□□□□ 0.21
CX3CL1P78423 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.37■□□□□ 0.21
CX3CL1P78423 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CX3CL1P78423 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CX3CL1P78423 LINC01006-201ENST00000333319 2292 ntBASIC16.37■□□□□ 0.21
CX3CL1P78423 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CX3CL1P78423 AC116050.2-201ENST00000612102 1779 ntBASIC16.37■□□□□ 0.21
CX3CL1P78423 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC16.37■□□□□ 0.21
CX3CL1P78423 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.37■□□□□ 0.21
CX3CL1P78423 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.37■□□□□ 0.21
CX3CL1P78423 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.37■□□□□ 0.21
CX3CL1P78423 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
CX3CL1P78423 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
CX3CL1P78423 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CX3CL1P78423 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CX3CL1P78423 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.37■□□□□ 0.21
CX3CL1P78423 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CX3CL1P78423 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CX3CL1P78423 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.36■□□□□ 0.21
CX3CL1P78423 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CX3CL1P78423 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms