Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.92■□□□□ 0.62
RNF4P78317 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.92■□□□□ 0.62
RNF4P78317 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.92■□□□□ 0.62
RNF4P78317 AL356652.1-201ENST00000615962 565 ntBASIC18.92■□□□□ 0.62
RNF4P78317 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RNF4P78317 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
RNF4P78317 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
RNF4P78317 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
RNF4P78317 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.91■□□□□ 0.62
RNF4P78317 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.91■□□□□ 0.62
RNF4P78317 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.91■□□□□ 0.62
RNF4P78317 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 MIR2861-201ENST00000636310 90 ntBASIC18.91■□□□□ 0.62
RNF4P78317 MYC-209ENST00000641252 345 ntBASIC18.91■□□□□ 0.62
RNF4P78317 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
RNF4P78317 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 AC006128.1-201ENST00000624704 1661 ntBASIC18.91■□□□□ 0.62
RNF4P78317 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.91■□□□□ 0.62
RNF4P78317 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.91■□□□□ 0.62
RNF4P78317 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RNF4P78317 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.91■□□□□ 0.62
RNF4P78317 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
RNF4P78317 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RNF4P78317 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.9■□□□□ 0.62
RNF4P78317 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF4P78317 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.9■□□□□ 0.62
RNF4P78317 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF4P78317 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
RNF4P78317 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.9■□□□□ 0.62
RNF4P78317 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF4P78317 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.9■□□□□ 0.62
RNF4P78317 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RNF4P78317 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF4P78317 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
RNF4P78317 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
RNF4P78317 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF4P78317 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RNF4P78317 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.9■□□□□ 0.62
RNF4P78317 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
RNF4P78317 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
RNF4P78317 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
RNF4P78317 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
RNF4P78317 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF4P78317 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF4P78317 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF4P78317 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.89■□□□□ 0.61
RNF4P78317 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF4P78317 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF4P78317 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.89■□□□□ 0.61
RNF4P78317 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
RNF4P78317 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.89■□□□□ 0.61
RNF4P78317 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
RNF4P78317 AL137060.1-201ENST00000618151 2648 ntBASIC18.89■□□□□ 0.61
RNF4P78317 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RNF4P78317 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF4P78317 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF4P78317 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF4P78317 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF4P78317 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
RNF4P78317 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF4P78317 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF4P78317 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF4P78317 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.88■□□□□ 0.61
RNF4P78317 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF4P78317 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF4P78317 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.87■□□□□ 0.61
RNF4P78317 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF4P78317 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF4P78317 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF4P78317 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.87■□□□□ 0.61
RNF4P78317 KRT18P6-201ENST00000555540 1265 ntBASIC18.87■□□□□ 0.61
RNF4P78317 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.87■□□□□ 0.61
RNF4P78317 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF4P78317 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms