Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CKS1BP61024 LSM4-201ENST00000252816 986 ntTSL 2 BASIC14.21□□□□□ -0.13
CKS1BP61024 RBM38-205ENST00000440234 686 ntTSL 2 BASIC14.21□□□□□ -0.13
CKS1BP61024 AL451085.2-201ENST00000605085 799 ntBASIC14.21□□□□□ -0.13
CKS1BP61024 pRNA.6-201ENST00000610482 90 ntBASIC14.21□□□□□ -0.13
CKS1BP61024 pRNA.5-201ENST00000612139 90 ntBASIC14.21□□□□□ -0.13
CKS1BP61024 pRNA.11-201ENST00000618423 90 ntBASIC14.21□□□□□ -0.13
CKS1BP61024 pRNA.13-201ENST00000619112 90 ntBASIC14.21□□□□□ -0.13
CKS1BP61024 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC14.21□□□□□ -0.13
CKS1BP61024 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 AL032819.2-201ENST00000624543 2162 ntBASIC14.21□□□□□ -0.13
CKS1BP61024 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CKS1BP61024 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
CKS1BP61024 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CKS1BP61024 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CKS1BP61024 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CKS1BP61024 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
CKS1BP61024 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CKS1BP61024 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC14.21□□□□□ -0.14
CKS1BP61024 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.14
CKS1BP61024 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC14.21□□□□□ -0.14
CKS1BP61024 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.14
CKS1BP61024 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CKS1BP61024 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CKS1BP61024 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CKS1BP61024 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC14.2□□□□□ -0.14
CKS1BP61024 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC14.2□□□□□ -0.14
CKS1BP61024 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC14.2□□□□□ -0.14
CKS1BP61024 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC14.2□□□□□ -0.14
CKS1BP61024 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC14.2□□□□□ -0.14
CKS1BP61024 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC14.2□□□□□ -0.14
CKS1BP61024 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CKS1BP61024 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CKS1BP61024 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC14.2□□□□□ -0.14
CKS1BP61024 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CKS1BP61024 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CKS1BP61024 MFF-203ENST00000349901 1716 ntTSL 2 BASIC14.2□□□□□ -0.14
CKS1BP61024 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CKS1BP61024 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC14.2□□□□□ -0.14
CKS1BP61024 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CKS1BP61024 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CKS1BP61024 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CKS1BP61024 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CKS1BP61024 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.19□□□□□ -0.14
CKS1BP61024 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CKS1BP61024 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC14.19□□□□□ -0.14
CKS1BP61024 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC14.19□□□□□ -0.14
CKS1BP61024 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC14.19□□□□□ -0.14
CKS1BP61024 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 AL034346.1-201ENST00000568244 1277 ntBASIC14.19□□□□□ -0.14
CKS1BP61024 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
CKS1BP61024 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CKS1BP61024 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC14.19□□□□□ -0.14
CKS1BP61024 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
CKS1BP61024 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CKS1BP61024 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
CKS1BP61024 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC14.19□□□□□ -0.14
CKS1BP61024 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC14.18□□□□□ -0.14
CKS1BP61024 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
CKS1BP61024 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.18□□□□□ -0.14
CKS1BP61024 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC14.18□□□□□ -0.14
CKS1BP61024 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CKS1BP61024 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC14.18□□□□□ -0.14
CKS1BP61024 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC14.18□□□□□ -0.14
CKS1BP61024 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CKS1BP61024 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CKS1BP61024 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC14.18□□□□□ -0.14
CKS1BP61024 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CKS1BP61024 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms