Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.77■□□□□ 0.76
HNF4AP41235 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
HNF4AP41235 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HNF4AP41235 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.76■□□□□ 0.75
HNF4AP41235 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HNF4AP41235 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.76■□□□□ 0.75
HNF4AP41235 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.76■□□□□ 0.75
HNF4AP41235 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.76■□□□□ 0.75
HNF4AP41235 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HNF4AP41235 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.76■□□□□ 0.75
HNF4AP41235 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
HNF4AP41235 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
HNF4AP41235 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 CDV3P1-201ENST00000471403 739 ntBASIC19.76■□□□□ 0.75
HNF4AP41235 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
HNF4AP41235 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.76■□□□□ 0.75
HNF4AP41235 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.76■□□□□ 0.75
HNF4AP41235 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HNF4AP41235 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.76■□□□□ 0.75
HNF4AP41235 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
HNF4AP41235 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HNF4AP41235 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.75■□□□□ 0.75
HNF4AP41235 AC020907.5-201ENST00000624372 1936 ntBASIC19.75■□□□□ 0.75
HNF4AP41235 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.75■□□□□ 0.75
HNF4AP41235 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.75■□□□□ 0.75
HNF4AP41235 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.75■□□□□ 0.75
HNF4AP41235 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.75■□□□□ 0.75
HNF4AP41235 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.75■□□□□ 0.75
HNF4AP41235 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
HNF4AP41235 MIR2861-201ENST00000636310 90 ntBASIC19.75■□□□□ 0.75
HNF4AP41235 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HNF4AP41235 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.75■□□□□ 0.75
HNF4AP41235 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.75■□□□□ 0.75
HNF4AP41235 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HNF4AP41235 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.74■□□□□ 0.75
HNF4AP41235 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.74■□□□□ 0.75
HNF4AP41235 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
HNF4AP41235 AC080038.1-201ENST00000611274 1154 ntBASIC19.74■□□□□ 0.75
HNF4AP41235 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HNF4AP41235 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HNF4AP41235 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HNF4AP41235 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HNF4AP41235 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.73■□□□□ 0.75
HNF4AP41235 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
HNF4AP41235 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.73■□□□□ 0.75
HNF4AP41235 AC092667.1-201ENST00000434301 2586 ntBASIC19.73■□□□□ 0.75
HNF4AP41235 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.73■□□□□ 0.75
HNF4AP41235 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.73■□□□□ 0.75
HNF4AP41235 DUX4L16-201ENST00000555130 1264 ntBASIC19.73■□□□□ 0.75
HNF4AP41235 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.73■□□□□ 0.75
HNF4AP41235 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.73■□□□□ 0.75
HNF4AP41235 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HNF4AP41235 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HNF4AP41235 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HNF4AP41235 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HNF4AP41235 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.72■□□□□ 0.75
HNF4AP41235 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.72■□□□□ 0.75
HNF4AP41235 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
HNF4AP41235 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.72■□□□□ 0.75
HNF4AP41235 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HNF4AP41235 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HNF4AP41235 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HNF4AP41235 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HNF4AP41235 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
HNF4AP41235 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms