Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
CCNFP41002 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNFP41002 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNFP41002 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.51■□□□□ 0.87
CCNFP41002 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNFP41002 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.51■□□□□ 0.87
CCNFP41002 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CCNFP41002 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CCNFP41002 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.51■□□□□ 0.87
CCNFP41002 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNFP41002 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
CCNFP41002 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNFP41002 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCNFP41002 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNFP41002 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNFP41002 AC061975.6-201ENST00000579045 1553 ntBASIC20.51■□□□□ 0.87
CCNFP41002 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNFP41002 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
CCNFP41002 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNFP41002 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNFP41002 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNFP41002 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNFP41002 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNFP41002 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.5■□□□□ 0.87
CCNFP41002 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.5■□□□□ 0.87
CCNFP41002 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
CCNFP41002 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.5■□□□□ 0.87
CCNFP41002 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.5■□□□□ 0.87
CCNFP41002 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.5■□□□□ 0.87
CCNFP41002 AP001160.3-201ENST00000601484 763 ntBASIC20.5■□□□□ 0.87
CCNFP41002 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.5■□□□□ 0.87
CCNFP41002 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNFP41002 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CCNFP41002 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNFP41002 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.5■□□□□ 0.87
CCNFP41002 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.5■□□□□ 0.87
CCNFP41002 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.5■□□□□ 0.87
CCNFP41002 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.5■□□□□ 0.87
CCNFP41002 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNFP41002 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCNFP41002 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCNFP41002 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCNFP41002 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCNFP41002 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.49■□□□□ 0.87
CCNFP41002 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.49■□□□□ 0.87
CCNFP41002 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCNFP41002 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.49■□□□□ 0.87
CCNFP41002 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.49■□□□□ 0.87
CCNFP41002 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.49■□□□□ 0.87
CCNFP41002 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCNFP41002 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
CCNFP41002 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.49■□□□□ 0.87
CCNFP41002 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCNFP41002 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCNFP41002 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.49■□□□□ 0.87
CCNFP41002 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.49■□□□□ 0.87
CCNFP41002 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
CCNFP41002 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.48■□□□□ 0.87
CCNFP41002 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
CCNFP41002 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CCNFP41002 KRT18P5-201ENST00000436075 1291 ntBASIC20.48■□□□□ 0.87
CCNFP41002 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.48■□□□□ 0.87
CCNFP41002 KRT18P20-201ENST00000548986 1279 ntBASIC20.48■□□□□ 0.87
CCNFP41002 AC120498.10-201ENST00000621827 505 ntBASIC20.48■□□□□ 0.87
CCNFP41002 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.48■□□□□ 0.87
CCNFP41002 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
CCNFP41002 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.48■□□□□ 0.87
CCNFP41002 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCNFP41002 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCNFP41002 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 TCF3P1-201ENST00000423021 1937 ntBASIC20.47■□□□□ 0.87
CCNFP41002 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.47■□□□□ 0.87
CCNFP41002 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CCNFP41002 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms