Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RPA3P35244 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.6■□□□□ 0.89
RPA3P35244 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.59■□□□□ 0.89
RPA3P35244 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RPA3P35244 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RPA3P35244 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.59■□□□□ 0.89
RPA3P35244 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.59■□□□□ 0.89
RPA3P35244 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.59■□□□□ 0.89
RPA3P35244 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
RPA3P35244 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.59■□□□□ 0.89
RPA3P35244 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 MIR935-201ENST00000401179 91 ntBASIC20.59■□□□□ 0.89
RPA3P35244 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.59■□□□□ 0.89
RPA3P35244 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 KRT18P14-201ENST00000534205 1250 ntBASIC20.59■□□□□ 0.89
RPA3P35244 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.59■□□□□ 0.89
RPA3P35244 TERF1P2-201ENST00000583350 1212 ntBASIC20.59■□□□□ 0.89
RPA3P35244 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.59■□□□□ 0.89
RPA3P35244 MIR6821-201ENST00000617625 74 ntBASIC20.59■□□□□ 0.89
RPA3P35244 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.59■□□□□ 0.89
RPA3P35244 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPA3P35244 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPA3P35244 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
RPA3P35244 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPA3P35244 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPA3P35244 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
RPA3P35244 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.58■□□□□ 0.89
RPA3P35244 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RPA3P35244 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPA3P35244 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.58■□□□□ 0.89
RPA3P35244 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.58■□□□□ 0.89
RPA3P35244 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.58■□□□□ 0.89
RPA3P35244 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RPA3P35244 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.58■□□□□ 0.88
RPA3P35244 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RPA3P35244 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
RPA3P35244 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 AC011484.1-201ENST00000377652 1995 ntBASIC20.57■□□□□ 0.88
RPA3P35244 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.57■□□□□ 0.88
RPA3P35244 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.57■□□□□ 0.88
RPA3P35244 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.57■□□□□ 0.88
RPA3P35244 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.57■□□□□ 0.88
RPA3P35244 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.57■□□□□ 0.88
RPA3P35244 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RPA3P35244 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
RPA3P35244 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPA3P35244 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.56■□□□□ 0.88
RPA3P35244 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.56■□□□□ 0.88
RPA3P35244 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.56■□□□□ 0.88
RPA3P35244 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
RPA3P35244 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.56■□□□□ 0.88
RPA3P35244 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.56■□□□□ 0.88
RPA3P35244 AC087623.3-201ENST00000607047 1098 ntBASIC20.56■□□□□ 0.88
RPA3P35244 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.56■□□□□ 0.88
RPA3P35244 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPA3P35244 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RPA3P35244 SMG8-203ENST00000578922 2178 ntBASIC20.56■□□□□ 0.88
RPA3P35244 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.56■□□□□ 0.88
RPA3P35244 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RPA3P35244 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RPA3P35244 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPA3P35244 TCF3P1-201ENST00000423021 1937 ntBASIC20.55■□□□□ 0.88
RPA3P35244 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RPA3P35244 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.55■□□□□ 0.88
RPA3P35244 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPA3P35244 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPA3P35244 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPA3P35244 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
RPA3P35244 AC026271.2-201ENST00000428091 497 ntBASIC20.55■□□□□ 0.88
RPA3P35244 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RPA3P35244 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.55■□□□□ 0.88
RPA3P35244 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPA3P35244 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RPA3P35244 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RPA3P35244 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RPA3P35244 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms