Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CIITAP33076 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.07■■□□□ 1.28
CIITAP33076 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC23.07■■□□□ 1.28
CIITAP33076 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23.07■■□□□ 1.28
CIITAP33076 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CIITAP33076 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CIITAP33076 AL121603.2-201ENST00000557373 2117 ntBASIC23.06■■□□□ 1.28
CIITAP33076 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 HES2-205ENST00000487437 968 ntTSL 3 BASIC23.06■■□□□ 1.28
CIITAP33076 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.06■■□□□ 1.28
CIITAP33076 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.06■■□□□ 1.28
CIITAP33076 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC23.06■■□□□ 1.28
CIITAP33076 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CIITAP33076 AC007225.1-201ENST00000566331 1836 ntBASIC23.05■■□□□ 1.28
CIITAP33076 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CIITAP33076 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.05■■□□□ 1.28
CIITAP33076 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
CIITAP33076 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CIITAP33076 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CIITAP33076 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CIITAP33076 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CIITAP33076 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CIITAP33076 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CIITAP33076 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CIITAP33076 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CIITAP33076 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC23.04■■□□□ 1.28
CIITAP33076 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CIITAP33076 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CIITAP33076 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.03■■□□□ 1.28
CIITAP33076 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC23.03■■□□□ 1.28
CIITAP33076 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.03■■□□□ 1.28
CIITAP33076 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC23.03■■□□□ 1.28
CIITAP33076 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CIITAP33076 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.03■■□□□ 1.28
CIITAP33076 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.03■■□□□ 1.28
CIITAP33076 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CIITAP33076 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CIITAP33076 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.03■■□□□ 1.28
CIITAP33076 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.03■■□□□ 1.28
CIITAP33076 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CIITAP33076 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CIITAP33076 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CIITAP33076 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CIITAP33076 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CIITAP33076 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CIITAP33076 CLDN5-201ENST00000403084 2357 ntBASIC23.03■■□□□ 1.28
CIITAP33076 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.02■■□□□ 1.28
CIITAP33076 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC23.02■■□□□ 1.28
CIITAP33076 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.02■■□□□ 1.28
CIITAP33076 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC23.02■■□□□ 1.28
CIITAP33076 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC23.02■■□□□ 1.28
CIITAP33076 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.02■■□□□ 1.28
CIITAP33076 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC23.02■■□□□ 1.28
CIITAP33076 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC23.02■■□□□ 1.28
CIITAP33076 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
CIITAP33076 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 BRWD1-AS2-201ENST00000603064 1028 ntBASIC23.02■■□□□ 1.28
CIITAP33076 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.02■■□□□ 1.28
CIITAP33076 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC23.02■■□□□ 1.28
CIITAP33076 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.02■■□□□ 1.28
CIITAP33076 FP700111.2-201ENST00000619190 1892 ntBASIC23.02■■□□□ 1.28
CIITAP33076 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC23.02■■□□□ 1.28
CIITAP33076 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CIITAP33076 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.01■■□□□ 1.27
CIITAP33076 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CIITAP33076 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CIITAP33076 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CIITAP33076 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CIITAP33076 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.01■■□□□ 1.27
CIITAP33076 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.01■■□□□ 1.27
CIITAP33076 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CIITAP33076 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms