Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN4P29074 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN4P29074 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.42■□□□□ 0.86
PTPN4P29074 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.42■□□□□ 0.86
PTPN4P29074 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.42■□□□□ 0.86
PTPN4P29074 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.42■□□□□ 0.86
PTPN4P29074 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.42■□□□□ 0.86
PTPN4P29074 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN4P29074 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
PTPN4P29074 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN4P29074 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.42■□□□□ 0.86
PTPN4P29074 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.42■□□□□ 0.86
PTPN4P29074 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTPN4P29074 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.42■□□□□ 0.86
PTPN4P29074 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.42■□□□□ 0.86
PTPN4P29074 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
PTPN4P29074 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.41■□□□□ 0.86
PTPN4P29074 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.41■□□□□ 0.86
PTPN4P29074 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.41■□□□□ 0.86
PTPN4P29074 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.41■□□□□ 0.86
PTPN4P29074 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PTPN4P29074 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.41■□□□□ 0.86
PTPN4P29074 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
PTPN4P29074 OR7E47P-201ENST00000546390 1422 ntBASIC20.41■□□□□ 0.86
PTPN4P29074 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
PTPN4P29074 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTPN4P29074 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.41■□□□□ 0.86
PTPN4P29074 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
PTPN4P29074 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN4P29074 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN4P29074 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN4P29074 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.4■□□□□ 0.86
PTPN4P29074 AC079140.4-201ENST00000507448 529 ntBASIC20.4■□□□□ 0.86
PTPN4P29074 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.4■□□□□ 0.86
PTPN4P29074 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN4P29074 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.4■□□□□ 0.86
PTPN4P29074 AC018445.3-201ENST00000624177 1945 ntBASIC20.4■□□□□ 0.86
PTPN4P29074 AC020907.5-201ENST00000624372 1936 ntBASIC20.4■□□□□ 0.86
PTPN4P29074 BX323043.1-201ENST00000641006 1765 ntBASIC20.4■□□□□ 0.86
PTPN4P29074 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
PTPN4P29074 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTPN4P29074 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
PTPN4P29074 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN4P29074 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN4P29074 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.39■□□□□ 0.86
PTPN4P29074 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN4P29074 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN4P29074 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN4P29074 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN4P29074 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN4P29074 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PTPN4P29074 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.39■□□□□ 0.85
PTPN4P29074 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.39■□□□□ 0.85
PTPN4P29074 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.39■□□□□ 0.85
PTPN4P29074 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PTPN4P29074 BID-214ENST00000617586 542 ntTSL 5 BASIC20.39■□□□□ 0.85
PTPN4P29074 AC073111.5-205ENST00000641717 521 ntBASIC20.39■□□□□ 0.85
PTPN4P29074 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTPN4P29074 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PTPN4P29074 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.39■□□□□ 0.85
PTPN4P29074 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
PTPN4P29074 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
PTPN4P29074 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
PTPN4P29074 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTPN4P29074 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 CDCA4P2-201ENST00000441182 718 ntBASIC20.38■□□□□ 0.85
PTPN4P29074 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.38■□□□□ 0.85
PTPN4P29074 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
PTPN4P29074 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.38■□□□□ 0.85
PTPN4P29074 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.38■□□□□ 0.85
PTPN4P29074 RAP2CP1-201ENST00000605103 478 ntBASIC20.38■□□□□ 0.85
PTPN4P29074 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.38■□□□□ 0.85
PTPN4P29074 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.38■□□□□ 0.85
PTPN4P29074 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.38■□□□□ 0.85
PTPN4P29074 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN4P29074 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN4P29074 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.37■□□□□ 0.85
PTPN4P29074 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN4P29074 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms