Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH3P20585 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH3P20585 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH3P20585 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH3P20585 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH3P20585 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH3P20585 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH3P20585 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.29■□□□□ 0.84
MSH3P20585 AL512625.2-201ENST00000417533 625 ntBASIC20.29■□□□□ 0.84
MSH3P20585 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.29■□□□□ 0.84
MSH3P20585 AC083906.2-201ENST00000511578 360 ntBASIC20.29■□□□□ 0.84
MSH3P20585 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH3P20585 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.29■□□□□ 0.84
MSH3P20585 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH3P20585 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MSH3P20585 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH3P20585 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH3P20585 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH3P20585 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH3P20585 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH3P20585 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 GPX1P1-201ENST00000388829 606 ntBASIC20.28■□□□□ 0.84
MSH3P20585 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 NCF1B-203ENST00000435988 1254 ntBASIC20.28■□□□□ 0.84
MSH3P20585 AC093787.1-201ENST00000450396 207 ntBASIC20.28■□□□□ 0.84
MSH3P20585 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.28■□□□□ 0.84
MSH3P20585 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH3P20585 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH3P20585 AC100791.3-201ENST00000617619 330 ntBASIC20.28■□□□□ 0.84
MSH3P20585 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH3P20585 AC027702.1-201ENST00000563810 1770 ntBASIC20.28■□□□□ 0.84
MSH3P20585 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.28■□□□□ 0.84
MSH3P20585 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
MSH3P20585 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSH3P20585 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.27■□□□□ 0.84
MSH3P20585 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
MSH3P20585 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.27■□□□□ 0.84
MSH3P20585 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
MSH3P20585 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
MSH3P20585 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.27■□□□□ 0.84
MSH3P20585 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.27■□□□□ 0.84
MSH3P20585 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.27■□□□□ 0.84
MSH3P20585 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.27■□□□□ 0.84
MSH3P20585 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.27■□□□□ 0.84
MSH3P20585 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.27■□□□□ 0.84
MSH3P20585 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
MSH3P20585 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.27■□□□□ 0.84
MSH3P20585 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSH3P20585 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.27■□□□□ 0.83
MSH3P20585 MKRN4P-201ENST00000444706 1521 ntBASIC20.27■□□□□ 0.83
MSH3P20585 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
MSH3P20585 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MSH3P20585 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
MSH3P20585 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MSH3P20585 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
MSH3P20585 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 CYP21A1P-202ENST00000354927 1481 ntBASIC20.26■□□□□ 0.83
MSH3P20585 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH3P20585 MCRIP2P1-201ENST00000394346 511 ntBASIC20.26■□□□□ 0.83
MSH3P20585 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.26■□□□□ 0.83
MSH3P20585 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.26■□□□□ 0.83
MSH3P20585 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH3P20585 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.26■□□□□ 0.83
MSH3P20585 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH3P20585 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
MSH3P20585 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 AC010980.2-201ENST00000587099 1412 ntBASIC20.26■□□□□ 0.83
MSH3P20585 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.26■□□□□ 0.83
MSH3P20585 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSH3P20585 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
MSH3P20585 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
MSH3P20585 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH3P20585 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH3P20585 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
MSH3P20585 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms