Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
XRCC1P18887 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 GUSBP6-202ENST00000438529 1198 ntBASIC20.32■□□□□ 0.84
XRCC1P18887 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 AC105036.2-201ENST00000569468 176 ntBASIC20.32■□□□□ 0.84
XRCC1P18887 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
XRCC1P18887 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.32■□□□□ 0.84
XRCC1P18887 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
XRCC1P18887 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
XRCC1P18887 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
XRCC1P18887 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC1P18887 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
XRCC1P18887 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
XRCC1P18887 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
XRCC1P18887 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
XRCC1P18887 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
XRCC1P18887 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 SLC29A4P1-201ENST00000398760 971 ntBASIC20.31■□□□□ 0.84
XRCC1P18887 AL512625.2-201ENST00000417533 625 ntBASIC20.31■□□□□ 0.84
XRCC1P18887 AC245052.3-201ENST00000450182 901 ntBASIC20.31■□□□□ 0.84
XRCC1P18887 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
XRCC1P18887 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
XRCC1P18887 AC069236.1-201ENST00000604339 616 ntBASIC20.31■□□□□ 0.84
XRCC1P18887 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
XRCC1P18887 AC008694.1-202ENST00000636953 945 ntBASIC20.31■□□□□ 0.84
XRCC1P18887 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.31■□□□□ 0.84
XRCC1P18887 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.31■□□□□ 0.84
XRCC1P18887 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
XRCC1P18887 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC1P18887 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC1P18887 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC1P18887 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC1P18887 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.3■□□□□ 0.84
XRCC1P18887 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC1P18887 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC1P18887 AL355802.2-201ENST00000402069 882 ntBASIC20.3■□□□□ 0.84
XRCC1P18887 AC142086.2-201ENST00000569753 217 ntBASIC20.3■□□□□ 0.84
XRCC1P18887 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.3■□□□□ 0.84
XRCC1P18887 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.3■□□□□ 0.84
XRCC1P18887 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC1P18887 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.3■□□□□ 0.84
XRCC1P18887 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
XRCC1P18887 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.3■□□□□ 0.84
XRCC1P18887 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC1P18887 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
XRCC1P18887 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC1P18887 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC1P18887 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.29■□□□□ 0.84
XRCC1P18887 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.29■□□□□ 0.84
XRCC1P18887 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.29■□□□□ 0.84
XRCC1P18887 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC1P18887 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
XRCC1P18887 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC1P18887 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.29■□□□□ 0.84
XRCC1P18887 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
XRCC1P18887 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.29■□□□□ 0.84
XRCC1P18887 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC1P18887 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
XRCC1P18887 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC1P18887 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.28■□□□□ 0.84
XRCC1P18887 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
XRCC1P18887 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 AC091799.1-201ENST00000422823 811 ntBASIC20.28■□□□□ 0.84
XRCC1P18887 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
XRCC1P18887 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.28■□□□□ 0.84
XRCC1P18887 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.28■□□□□ 0.84
XRCC1P18887 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.28■□□□□ 0.84
XRCC1P18887 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
XRCC1P18887 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.28■□□□□ 0.84
XRCC1P18887 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.28■□□□□ 0.84
XRCC1P18887 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.28■□□□□ 0.84
XRCC1P18887 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
XRCC1P18887 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC1P18887 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC1P18887 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms