Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RB1P06400 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RB1P06400 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RB1P06400 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RB1P06400 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RB1P06400 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
RB1P06400 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RB1P06400 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.74■■□□□ 1.07
RB1P06400 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.74■■□□□ 1.07
RB1P06400 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.74■■□□□ 1.07
RB1P06400 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.74■■□□□ 1.07
RB1P06400 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.74■■□□□ 1.07
RB1P06400 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.74■■□□□ 1.07
RB1P06400 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.74■■□□□ 1.07
RB1P06400 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RB1P06400 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RB1P06400 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RB1P06400 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.74■■□□□ 1.07
RB1P06400 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.74■■□□□ 1.07
RB1P06400 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RB1P06400 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.74■■□□□ 1.07
RB1P06400 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
RB1P06400 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.73■■□□□ 1.07
RB1P06400 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RB1P06400 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RB1P06400 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RB1P06400 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RB1P06400 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
RB1P06400 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RB1P06400 KRT16P5-201ENST00000455284 522 ntBASIC21.73■■□□□ 1.07
RB1P06400 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.73■■□□□ 1.07
RB1P06400 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RB1P06400 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
RB1P06400 AF186192.3-201ENST00000583427 947 ntBASIC21.73■■□□□ 1.07
RB1P06400 AL445228.2-201ENST00000605589 952 ntBASIC21.73■■□□□ 1.07
RB1P06400 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RB1P06400 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RB1P06400 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.73■■□□□ 1.07
RB1P06400 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.72■■□□□ 1.07
RB1P06400 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.72■■□□□ 1.07
RB1P06400 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.72■■□□□ 1.07
RB1P06400 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RB1P06400 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.72■■□□□ 1.07
RB1P06400 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RB1P06400 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RB1P06400 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.71■■□□□ 1.07
RB1P06400 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.71■■□□□ 1.07
RB1P06400 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RB1P06400 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RB1P06400 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RB1P06400 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RB1P06400 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
RB1P06400 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.71■■□□□ 1.07
RB1P06400 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
RB1P06400 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
RB1P06400 HTR7P1-201ENST00000538670 1336 ntBASIC21.71■■□□□ 1.07
RB1P06400 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RB1P06400 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RB1P06400 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.7■■□□□ 1.07
RB1P06400 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RB1P06400 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RB1P06400 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RB1P06400 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RB1P06400 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.7■■□□□ 1.06
RB1P06400 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RB1P06400 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.7■■□□□ 1.06
RB1P06400 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.7■■□□□ 1.06
RB1P06400 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.7■■□□□ 1.06
RB1P06400 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RB1P06400 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RB1P06400 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
RB1P06400 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
RB1P06400 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RB1P06400 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RB1P06400 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RB1P06400 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RB1P06400 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RB1P06400 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RB1P06400 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.69■■□□□ 1.06
RB1P06400 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.69■■□□□ 1.06
RB1P06400 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.69■■□□□ 1.06
RB1P06400 RN7SL850P-201ENST00000579959 291 ntBASIC21.69■■□□□ 1.06
RB1P06400 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RB1P06400 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RB1P06400 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.68■■□□□ 1.06
RB1P06400 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RB1P06400 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
RB1P06400 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.68■■□□□ 1.06
RB1P06400 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms