Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LDB3O75112 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 MKRN4P-201ENST00000444706 1521 ntBASIC19.22■□□□□ 0.67
LDB3O75112 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LDB3O75112 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LDB3O75112 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.22■□□□□ 0.67
LDB3O75112 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 GPX1P1-201ENST00000388829 606 ntBASIC19.22■□□□□ 0.67
LDB3O75112 AL512625.2-201ENST00000417533 625 ntBASIC19.22■□□□□ 0.67
LDB3O75112 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.22■□□□□ 0.67
LDB3O75112 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.22■□□□□ 0.67
LDB3O75112 MIR2861-201ENST00000636310 90 ntBASIC19.22■□□□□ 0.67
LDB3O75112 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LDB3O75112 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
LDB3O75112 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
LDB3O75112 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
LDB3O75112 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LDB3O75112 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LDB3O75112 MCRIP2P1-201ENST00000394346 511 ntBASIC19.21■□□□□ 0.67
LDB3O75112 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.21■□□□□ 0.67
LDB3O75112 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.21■□□□□ 0.67
LDB3O75112 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.21■□□□□ 0.67
LDB3O75112 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.21■□□□□ 0.67
LDB3O75112 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
LDB3O75112 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LDB3O75112 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.21■□□□□ 0.67
LDB3O75112 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
LDB3O75112 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LDB3O75112 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.21■□□□□ 0.67
LDB3O75112 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.2■□□□□ 0.66
LDB3O75112 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.2■□□□□ 0.66
LDB3O75112 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.2■□□□□ 0.66
LDB3O75112 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
LDB3O75112 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 AC100791.3-201ENST00000617619 330 ntBASIC19.2■□□□□ 0.66
LDB3O75112 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.2■□□□□ 0.66
LDB3O75112 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
LDB3O75112 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.2■□□□□ 0.66
LDB3O75112 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.2■□□□□ 0.66
LDB3O75112 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.2■□□□□ 0.66
LDB3O75112 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LDB3O75112 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.19■□□□□ 0.66
LDB3O75112 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.19■□□□□ 0.66
LDB3O75112 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.19■□□□□ 0.66
LDB3O75112 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.19■□□□□ 0.66
LDB3O75112 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.19■□□□□ 0.66
LDB3O75112 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.19■□□□□ 0.66
LDB3O75112 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.19■□□□□ 0.66
LDB3O75112 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.19■□□□□ 0.66
LDB3O75112 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
LDB3O75112 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.19■□□□□ 0.66
LDB3O75112 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LDB3O75112 AC087633.2-202ENST00000565166 1439 ntBASIC19.18■□□□□ 0.66
LDB3O75112 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDB3O75112 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LDB3O75112 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms