Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.49■□□□□ 0.87
SHOX2O60902 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.49■□□□□ 0.87
SHOX2O60902 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.49■□□□□ 0.87
SHOX2O60902 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHOX2O60902 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 AC133637.1-201ENST00000624115 1537 ntBASIC20.48■□□□□ 0.87
SHOX2O60902 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SHOX2O60902 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 AC010141.3-201ENST00000456659 717 ntBASIC20.48■□□□□ 0.87
SHOX2O60902 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
SHOX2O60902 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.48■□□□□ 0.87
SHOX2O60902 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SHOX2O60902 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHOX2O60902 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
SHOX2O60902 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.47■□□□□ 0.87
SHOX2O60902 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
SHOX2O60902 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.47■□□□□ 0.87
SHOX2O60902 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.47■□□□□ 0.87
SHOX2O60902 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.47■□□□□ 0.87
SHOX2O60902 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 AC087239.1-201ENST00000622671 572 ntBASIC20.47■□□□□ 0.87
SHOX2O60902 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHOX2O60902 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SHOX2O60902 LTB4R2-202ENST00000528054 3092 ntBASIC20.47■□□□□ 0.87
SHOX2O60902 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHOX2O60902 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHOX2O60902 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SHOX2O60902 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
SHOX2O60902 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHOX2O60902 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHOX2O60902 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.46■□□□□ 0.87
SHOX2O60902 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.46■□□□□ 0.87
SHOX2O60902 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SHOX2O60902 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.46■□□□□ 0.87
SHOX2O60902 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.46■□□□□ 0.87
SHOX2O60902 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.46■□□□□ 0.87
SHOX2O60902 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHOX2O60902 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHOX2O60902 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHOX2O60902 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.46■□□□□ 0.87
SHOX2O60902 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.46■□□□□ 0.87
SHOX2O60902 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.46■□□□□ 0.87
SHOX2O60902 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHOX2O60902 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.46■□□□□ 0.87
SHOX2O60902 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.45■□□□□ 0.86
SHOX2O60902 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.45■□□□□ 0.86
SHOX2O60902 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.45■□□□□ 0.86
SHOX2O60902 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SHOX2O60902 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.45■□□□□ 0.86
SHOX2O60902 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.45■□□□□ 0.86
SHOX2O60902 AC137630.3-201ENST00000607245 391 ntBASIC20.45■□□□□ 0.86
SHOX2O60902 AL031848.2-201ENST00000607670 837 ntBASIC20.45■□□□□ 0.86
SHOX2O60902 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHOX2O60902 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.45■□□□□ 0.86
SHOX2O60902 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.44■□□□□ 0.86
SHOX2O60902 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.44■□□□□ 0.86
SHOX2O60902 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.44■□□□□ 0.86
SHOX2O60902 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms