Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC11O43248 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC11O43248 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
HOXC11O43248 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
HOXC11O43248 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
HOXC11O43248 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.87■□□□□ 0.93
HOXC11O43248 RPS2P4-201ENST00000476944 856 ntBASIC20.87■□□□□ 0.93
HOXC11O43248 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXC11O43248 C1QBPP2-201ENST00000528754 825 ntBASIC20.87■□□□□ 0.93
HOXC11O43248 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
HOXC11O43248 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.87■□□□□ 0.93
HOXC11O43248 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.87■□□□□ 0.93
HOXC11O43248 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC11O43248 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
HOXC11O43248 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXC11O43248 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.86■□□□□ 0.93
HOXC11O43248 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.86■□□□□ 0.93
HOXC11O43248 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HOXC11O43248 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 AC008550.1-201ENST00000511500 884 ntBASIC20.86■□□□□ 0.93
HOXC11O43248 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.86■□□□□ 0.93
HOXC11O43248 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.86■□□□□ 0.93
HOXC11O43248 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HOXC11O43248 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC11O43248 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
HOXC11O43248 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC11O43248 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.85■□□□□ 0.93
HOXC11O43248 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC11O43248 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC11O43248 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC11O43248 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
HOXC11O43248 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC11O43248 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.85■□□□□ 0.93
HOXC11O43248 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.85■□□□□ 0.93
HOXC11O43248 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.85■□□□□ 0.93
HOXC11O43248 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC11O43248 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC11O43248 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC11O43248 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXC11O43248 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC11O43248 AC027702.1-201ENST00000563810 1770 ntBASIC20.85■□□□□ 0.93
HOXC11O43248 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC11O43248 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 FBXW4P1-201ENST00000426721 2239 ntBASIC20.84■□□□□ 0.93
HOXC11O43248 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HOXC11O43248 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC11O43248 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HOXC11O43248 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.84■□□□□ 0.93
HOXC11O43248 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.84■□□□□ 0.93
HOXC11O43248 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC11O43248 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
HOXC11O43248 FAM197Y4-202ENST00000622692 608 ntBASIC20.84■□□□□ 0.93
HOXC11O43248 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC11O43248 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC11O43248 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
HOXC11O43248 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
HOXC11O43248 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC11O43248 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC11O43248 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC11O43248 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC11O43248 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.83■□□□□ 0.93
HOXC11O43248 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.83■□□□□ 0.93
HOXC11O43248 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXC11O43248 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC11O43248 AC120498.8-201ENST00000614275 531 ntBASIC20.83■□□□□ 0.93
HOXC11O43248 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC11O43248 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC11O43248 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC11O43248 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
HOXC11O43248 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms