Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.82■□□□□ 0.6
CPSF4LA6NMK7 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 YBX1P1-201ENST00000445822 960 ntBASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 TERF1P2-201ENST00000583350 1212 ntBASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 AIRN-201ENST00000601203 4374 ntBASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CPSF4LA6NMK7 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 AC092720.2-201ENST00000602388 1665 ntBASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 AC116050.2-201ENST00000612102 1779 ntBASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CPSF4LA6NMK7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 AL162377.1-201ENST00000618844 1793 ntBASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 KRT18P14-201ENST00000534205 1250 ntBASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 CCDC92B-201ENST00000575506 885 ntBASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 AFG3L1P-217ENST00000557444 2447 ntBASIC18.79■□□□□ 0.6
CPSF4LA6NMK7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CPSF4LA6NMK7 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 AC004854.2-201ENST00000608450 1441 ntBASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CPSF4LA6NMK7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms