Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 RN7SL850P-201ENST00000579959 291 ntBASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 AC145285.6-201ENST00000604632 637 ntBASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC163A0A0D9SF12 HTR7P1-201ENST00000538670 1336 ntBASIC20.33■□□□□ 0.85
CCDC163A0A0D9SF12 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC163A0A0D9SF12 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC163A0A0D9SF12 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.33■□□□□ 0.85
CCDC163A0A0D9SF12 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC163A0A0D9SF12 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC163A0A0D9SF12 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC163A0A0D9SF12 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC163A0A0D9SF12 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.33■□□□□ 0.85
CCDC163A0A0D9SF12 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC163A0A0D9SF12 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC163A0A0D9SF12 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC163A0A0D9SF12 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC163A0A0D9SF12 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 KRT18P35-201ENST00000510488 1269 ntBASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC163A0A0D9SF12 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 AC023632.3-201ENST00000521633 145 ntBASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 AC073195.1-201ENST00000607241 877 ntBASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC163A0A0D9SF12 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC163A0A0D9SF12 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC163A0A0D9SF12 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC163A0A0D9SF12 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC163A0A0D9SF12 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC163A0A0D9SF12 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC163A0A0D9SF12 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC163A0A0D9SF12 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.29■□□□□ 0.84
CCDC163A0A0D9SF12 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CCDC163A0A0D9SF12 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC163A0A0D9SF12 AC005363.2-201ENST00000618631 242 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms